Protein : Qrob_P0076390.2 Q. robur
Protein Identifier  ? Qrob_P0076390.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) K03127 - transcription initiation factor TFIID subunit 13 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 168  
Kegg Orthology  K03127
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
GO:0006366 transcription from RNA polymerase II promoter The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330834 34 166 + 133 none 88.67 150 87.22 1e-78 transcription initiation factor TFIID subunit 13
blastp_kegg lcl|pper:PRUPE_ppa012882mg 34 166 + 133 none 88.67 150 87.22 1e-78 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G215700g 34 165 + 132 none 97.06 136 85.61 8e-78 hypothetical protein
blastp_kegg lcl|gmx:100796504 34 165 + 132 none 97.06 136 85.61 6e-77 transcription initiation factor TFIID subunit 13-like
blastp_kegg lcl|gmx:100789657 34 165 + 132 none 97.06 136 84.85 3e-76 transcription initiation factor TFIID subunit 13-like
blastp_kegg lcl|cam:101506132 34 165 + 132 none 97.06 136 84.09 3e-76 transcription initiation factor TFIID subunit 13-like
blastp_kegg lcl|rcu:RCOM_1347480 34 157 + 124 none 96.88 128 87.90 9e-75 Transcription initiation factor TFIID subunit putative
blastp_kegg lcl|mdm:103411408 34 166 + 133 none 88.67 150 81.20 5e-74 transcription initiation factor TFIID subunit 13
blastp_kegg lcl|mtr:MTR_1g087370 34 165 + 132 none 97.06 136 80.30 2e-73 Transcription initiation factor TFIID subunit
blastp_kegg lcl|fve:101303615 34 166 + 133 Gaps:2 95.74 141 82.22 3e-73 transcription initiation factor TFIID subunit 13-like
blastp_pdb 1bh9_A 63 107 + 45 none 100.00 45 55.56 1e-11 mol:protein length:45 TAFII18
blastp_pdb 1bh8_A 63 107 + 45 none 100.00 45 55.56 1e-11 mol:protein length:45 TAFII18
blastp_uniprot_sprot sp|Q6NQH4|TAF13_ARATH 48 157 + 110 Gaps:4 84.13 126 76.42 3e-53 Transcription initiation factor TFIID subunit 13 OS Arabidopsis thaliana GN TAF13 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R9W6|TAF13_PONAB 58 151 + 94 Gaps:2 74.19 124 57.61 2e-28 Transcription initiation factor TFIID subunit 13 OS Pongo abelii GN TAF13 PE 2 SV 1
blastp_uniprot_sprot sp|P61216|TAF13_MOUSE 58 151 + 94 Gaps:2 74.19 124 57.61 2e-28 Transcription initiation factor TFIID subunit 13 OS Mus musculus GN Taf13 PE 2 SV 1
blastp_uniprot_sprot sp|Q15543|TAF13_HUMAN 58 151 + 94 Gaps:2 74.19 124 57.61 2e-28 Transcription initiation factor TFIID subunit 13 OS Homo sapiens GN TAF13 PE 1 SV 1
blastp_uniprot_sprot sp|Q148M7|TAF13_BOVIN 58 151 + 94 Gaps:2 74.19 124 57.61 2e-28 Transcription initiation factor TFIID subunit 13 OS Bos taurus GN TAF13 PE 2 SV 1
blastp_uniprot_sprot sp|Q54CN8|TAF13_DICDI 56 151 + 96 Gaps:1 89.62 106 53.68 3e-27 Transcription initiation factor TFIID subunit 13 OS Dictyostelium discoideum GN taf13 PE 3 SV 1
blastp_uniprot_sprot sp|O60076|TAF13_SCHPO 59 155 + 97 none 87.39 111 35.05 1e-16 Transcription initiation factor TFIID subunit 13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN taf13 PE 3 SV 3
blastp_uniprot_sprot sp|P11747|TAF13_YEAST 59 155 + 97 Gaps:7 59.88 167 36.00 5e-14 Transcription initiation factor TFIID subunit 13 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TAF13 PE 1 SV 2
blastp_uniprot_sprot sp|O75486|SUPT3_HUMAN 32 132 + 101 Gaps:7 24.56 399 38.78 9e-13 Transcription initiation protein SPT3 homolog OS Homo sapiens GN SUPT3H PE 1 SV 2
blastp_uniprot_sprot sp|O14311|SPT3_SCHPO 64 148 + 85 Gaps:2 28.34 307 34.48 1e-10 SAGA complex subunit spt3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spt3 PE 1 SV 2
rpsblast_cdd gnl|CDD|173962 61 151 + 91 Gaps:1 100.00 92 56.52 2e-30 cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA TFIIB TFIID TFIIE TFIIF and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites core-promoter recognition or a role in essential catalytic activity. Each TAF with the help of a specific activator is required only for expression of subset of genes and is not universally involved for transcription as are GTFs. In yeast and human cells TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and are found in core histones TAFs and many other transcription factors. TFIID has a histone octamer-like substructure. TAF13 interacts with TAF11 and makes a histone-like heterodimer similar to H3/H4-like proteins. The dimer may be structurally and functionally similar to the spt3 protein within the SAGA histone acetyltransferase complex.
rpsblast_cdd gnl|CDD|190265 64 151 + 88 Gaps:2 96.77 93 52.22 7e-23 pfam02269 TFIID-18kDa Transcription initiation factor IID 18kD subunit. This family includes the Spt3 yeast transcription factors and the 18kD subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold.
rpsblast_cdd gnl|CDD|34845 59 166 + 108 none 85.71 126 31.48 2e-18 COG5248 TAF19 Transcription initiation factor TFIID subunit TAF13 [Transcription].
rpsblast_kog gnl|CDD|39104 59 154 + 96 Gaps:1 87.16 109 58.95 1e-30 KOG3901 KOG3901 KOG3901 Transcription initiation factor IID subunit [Transcription].
rpsblast_kog gnl|CDD|39105 34 159 + 126 Gaps:9 34.38 352 30.58 2e-09 KOG3902 KOG3902 KOG3902 Histone acetyltransferase PCAF/SAGA subunit SUPT3H/SPT3 [Transcription].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 64 151 88 PF02269 none Transcription initiation factor IID, 18kD subunit IPR003195
PANTHER 59 154 96 PTHR11380 none none IPR003195
Gene3D 64 106 43 G3DSA:1.10.20.10 none none IPR009072
Coils 136 161 26 Coil none none none
SUPERFAMILY 64 106 43 SSF47113 none none IPR009072

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 15   Mitochondrion 3 0.038 0.734 NON-PLANT 15