Protein : Qrob_P0075910.2 Q. robur
Protein Identifier  ? Qrob_P0075910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02925 - large subunit ribosomal protein L3e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 307  
Kegg Orthology  K02925
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100260533 1 306 + 306 none 77.08 397 95.42 0.0 60S ribosomal protein L3-like
blastp_kegg lcl|rcu:RCOM_0959710 1 306 + 306 none 78.66 389 94.44 0.0 60S ribosomal protein L3 putative
blastp_kegg lcl|gmx:100806256 1 306 + 306 none 78.66 389 91.83 0.0 60S ribosomal protein L3-like
blastp_kegg lcl|pop:POPTR_0005s21640g 1 306 + 306 none 78.66 389 91.50 0.0 POPTRDRAFT_831551 ribosomal protein 1
blastp_kegg lcl|gmx:100819132 1 306 + 306 none 78.66 389 91.50 0.0 60S ribosomal protein L3-like
blastp_kegg lcl|pop:POPTR_0002s06680g 1 306 + 306 none 78.66 389 91.50 0.0 POPTRDRAFT_830146 ribosomal protein 1
blastp_kegg lcl|tcc:TCM_035647 1 306 + 306 none 78.66 389 90.52 0.0 Ribosomal protein 1
blastp_kegg lcl|sly:778284 1 306 + 306 none 78.66 389 91.50 0.0 RPL3 ribosomal protein L3
blastp_kegg lcl|sot:102598069 1 306 + 306 none 78.66 389 91.18 0.0 60S ribosomal protein L3-like
blastp_kegg lcl|pda:103717160 1 306 + 306 none 78.66 389 90.85 0.0 60S ribosomal protein L3-like
blastp_pdb 3izr_C 1 306 + 306 none 78.66 389 87.58 0.0 mol:protein length:389 60S ribosomal protein L3 (L3p)
blastp_pdb 2zkr_b 1 305 + 305 Gaps:7 76.92 403 64.84 2e-145 mol:protein length:403 60S Ribosomal protein L3
blastp_pdb 3u5i_B 11 305 + 295 Gaps:4 75.19 387 66.32 6e-135 mol:protein length:387 60S ribosomal protein L3
blastp_pdb 3u5e_B 11 305 + 295 Gaps:4 75.19 387 66.32 6e-135 mol:protein length:387 60S ribosomal protein L3
blastp_pdb 3o5h_C 11 305 + 295 Gaps:4 75.19 387 66.32 6e-135 mol:protein length:387 60S ribosomal protein L3
blastp_pdb 3o58_C 11 305 + 295 Gaps:4 75.19 387 66.32 6e-135 mol:protein length:387 60S ribosomal protein L3
blastp_pdb 1s1i_C 11 305 + 295 Gaps:4 75.39 386 66.32 6e-135 mol:protein length:386 60S ribosomal protein L3
blastp_pdb 3izs_C 11 305 + 295 Gaps:4 75.00 388 66.32 7e-135 mol:protein length:388 60S ribosomal protein rpL3 (L3p)
blastp_pdb 4a1e_B 1 303 + 303 Gaps:6 75.96 391 60.61 1e-132 mol:protein length:391 RIBOSOMAL PROTEIN L3
blastp_pdb 4a1c_B 1 303 + 303 Gaps:6 75.96 391 60.61 1e-132 mol:protein length:391 RIBOSOMAL PROTEIN L3
blastp_uniprot_sprot sp|P35684|RL3_ORYSJ 1 306 + 306 none 78.66 389 87.25 0.0 60S ribosomal protein L3 OS Oryza sativa subsp. japonica GN RPL3 PE 2 SV 2
blastp_uniprot_sprot sp|P17094|RL31_ARATH 11 304 + 294 none 75.58 389 89.12 0.0 60S ribosomal protein L3-1 OS Arabidopsis thaliana GN ARP1 PE 2 SV 5
blastp_uniprot_sprot sp|P22738|RL32_ARATH 11 304 + 294 none 75.38 390 86.05 0.0 60S ribosomal protein L3-2 OS Arabidopsis thaliana GN ARP2 PE 2 SV 4
blastp_uniprot_sprot sp|P49149|RL3_TOXCA 1 305 + 305 Gaps:4 76.37 402 64.82 7e-148 60S ribosomal protein L3 OS Toxocara canis GN RPL3 PE 2 SV 2
blastp_uniprot_sprot sp|P39023|RL3_HUMAN 1 305 + 305 Gaps:7 76.92 403 66.13 2e-146 60S ribosomal protein L3 OS Homo sapiens GN RPL3 PE 1 SV 2
blastp_uniprot_sprot sp|P27659|RL3_MOUSE 1 305 + 305 Gaps:7 76.92 403 65.81 1e-145 60S ribosomal protein L3 OS Mus musculus GN Rpl3 PE 1 SV 3
blastp_uniprot_sprot sp|P21531|RL3_RAT 1 305 + 305 Gaps:7 76.92 403 65.81 1e-145 60S ribosomal protein L3 OS Rattus norvegicus GN Rpl3 PE 1 SV 3
blastp_uniprot_sprot sp|P39872|RL3_BOVIN 1 305 + 305 Gaps:7 76.92 403 64.84 8e-145 60S ribosomal protein L3 OS Bos taurus GN RPL3 PE 2 SV 2
blastp_uniprot_sprot sp|Q4R5Q0|RL3_MACFA 1 305 + 305 Gaps:7 76.92 403 65.81 1e-144 60S ribosomal protein L3 OS Macaca fascicularis GN RPL3 PE 2 SV 3
blastp_uniprot_sprot sp|Q8NKF4|RL3_ASPFU 1 305 + 305 Gaps:3 77.04 392 66.89 2e-144 60S ribosomal protein L3 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN rpl3 PE 1 SV 2

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 125 125 G3DSA:3.30.1430.10 none none none
SUPERFAMILY 1 287 287 SSF50447 none none IPR009000
Gene3D 150 287 138 G3DSA:2.40.30.10 none none none
Pfam 1 260 260 PF00297 none Ribosomal protein L3 IPR000597
ProSitePatterns 129 152 24 PS00474 none Ribosomal protein L3 signature. IPR019926
PANTHER 1 305 305 PTHR11363 none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 80   Mitochondrion 4 0.059 0.700 NON-PLANT 80