Protein : Qrob_P0074280.2 Q. robur
Protein Identifier  ? Qrob_P0074280.2 Organism . Name  Quercus robur
Score  88.0 Score Type  egn
Protein Description  (M=1) K02893 - large subunit ribosomal protein L23Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 155  
Kegg Orthology  K02893
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101302303 1 154 + 154 Gaps:2 100.00 152 96.71 2e-94 60S ribosomal protein L23a-like
blastp_kegg lcl|tcc:TCM_041912 1 154 + 154 Gaps:3 100.00 151 96.03 6e-93 Ribosomal protein L23AB isoform 1
blastp_kegg lcl|gmx:100779362 1 154 + 154 Gaps:3 100.00 151 96.03 1e-92 60S ribosomal protein L23A-like
blastp_kegg lcl|cic:CICLE_v10032980mg 1 154 + 154 Gaps:1 100.00 153 92.16 2e-92 hypothetical protein
blastp_kegg lcl|cit:102630069 1 154 + 154 Gaps:1 100.00 153 92.16 2e-92 60S ribosomal protein L23a-like
blastp_kegg lcl|cmo:103500191 1 154 + 154 Gaps:1 100.00 153 91.50 3e-90 60S ribosomal protein L23a-like
blastp_kegg lcl|csv:101226386 1 154 + 154 Gaps:1 100.00 153 91.50 3e-90 60S ribosomal protein L23a-like
blastp_kegg lcl|csv:101222977 1 154 + 154 Gaps:1 100.00 153 91.50 3e-90 60S ribosomal protein L23a-like
blastp_kegg lcl|pmum:103332598 1 154 + 154 none 100.00 154 94.16 2e-89 60S ribosomal protein L23a
blastp_kegg lcl|pper:PRUPE_ppa012791mg 1 154 + 154 none 100.00 154 93.51 8e-89 hypothetical protein
blastp_pdb 3izr_X 1 154 + 154 Gaps:4 100.00 152 84.87 2e-72 mol:protein length:152 60S ribosomal protein L23a (L23p)
blastp_pdb 2j37_4 1 154 + 154 Gaps:2 100.00 152 84.87 1e-65 mol:protein length:152 60S RIBOSOMAL PROTEIN L23
blastp_pdb 2go5_4 1 154 + 154 Gaps:2 100.00 152 84.87 1e-65 mol:protein length:152 ribosomal protein L23
blastp_pdb 2zkr_s 34 154 + 121 none 77.56 156 80.17 6e-62 mol:protein length:156 60S Ribosomal protein L23a
blastp_pdb 3u5i_X 29 154 + 126 none 88.73 142 57.94 4e-46 mol:protein length:142 60S ribosomal protein L25
blastp_pdb 3u5e_X 29 154 + 126 none 88.73 142 57.94 4e-46 mol:protein length:142 60S ribosomal protein L25
blastp_pdb 3o5h_W 29 154 + 126 none 88.73 142 57.94 4e-46 mol:protein length:142 60S ribosomal protein L25
blastp_pdb 3o58_W 29 154 + 126 none 88.73 142 57.94 4e-46 mol:protein length:142 60S ribosomal protein L25
blastp_pdb 3izs_X 29 154 + 126 none 88.73 142 57.94 4e-46 mol:protein length:142 60S ribosomal protein rpL25 (L23p)
blastp_pdb 2wwb_K 29 154 + 126 none 88.73 142 57.94 4e-46 mol:protein length:142 60S RIBOSOMAL PROTEIN L25
blastp_uniprot_sprot sp|Q9AT35|RL23A_DAUCA 1 154 + 154 none 100.00 154 88.96 5e-83 60S ribosomal protein L23a OS Daucus carota GN RPL23A PE 2 SV 1
blastp_uniprot_sprot sp|O22644|RL23A_FRIAG 3 154 + 152 Gaps:3 98.05 154 90.07 6e-79 60S ribosomal protein L23A OS Fritillaria agrestis GN RPL23A PE 2 SV 1
blastp_uniprot_sprot sp|Q07761|RL23A_TOBAC 1 154 + 154 none 100.00 154 88.31 1e-71 60S ribosomal protein L23a OS Nicotiana tabacum GN RPL23A PE 2 SV 1
blastp_uniprot_sprot sp|Q9M3C3|R23A2_ARATH 1 154 + 154 none 100.00 154 87.66 6e-69 60S ribosomal protein L23a-2 OS Arabidopsis thaliana GN RPL23AB PE 2 SV 1
blastp_uniprot_sprot sp|Q8LD46|R23A1_ARATH 1 154 + 154 none 100.00 154 88.96 4e-68 60S ribosomal protein L23a-1 OS Arabidopsis thaliana GN RPL23AA PE 2 SV 2
blastp_uniprot_sprot sp|P62752|RL23A_RAT 34 154 + 121 none 77.56 156 80.17 2e-61 60S ribosomal protein L23a OS Rattus norvegicus GN Rpl23a PE 2 SV 1
blastp_uniprot_sprot sp|P62751|RL23A_MOUSE 34 154 + 121 none 77.56 156 80.17 2e-61 60S ribosomal protein L23a OS Mus musculus GN Rpl23a PE 1 SV 1
blastp_uniprot_sprot sp|P62750|RL23A_HUMAN 34 154 + 121 none 77.56 156 80.17 2e-61 60S ribosomal protein L23a OS Homo sapiens GN RPL23A PE 1 SV 1
blastp_uniprot_sprot sp|Q24JY1|RL23A_BOVIN 34 154 + 121 none 77.56 156 80.17 2e-61 60S ribosomal protein L23a OS Bos taurus GN RPL23A PE 2 SV 1
blastp_uniprot_sprot sp|P51997|RL25_PUCGR 8 154 + 147 Gaps:7 97.47 158 59.09 3e-53 60S ribosomal protein L25 OS Puccinia graminis PE 2 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 72 150 79 PF00276 none Ribosomal protein L23 IPR013025
TIGRFAM 78 154 77 TIGR03636 none uL23_arch: ribosomal protein uL23 IPR019985
ProSitePatterns 132 147 16 PS00050 none Ribosomal protein L23 signature. IPR001014
PANTHER 2 154 153 PTHR11620 none none none
Hamap 74 154 81 MF_01369_A none 50S ribosomal protein L23 [rplW]. IPR013025
Gene3D 70 154 85 G3DSA:3.30.70.330 none none IPR012677
Pfam 13 66 54 PF03939 none Ribosomal protein L23, N-terminal domain IPR005633
SUPERFAMILY 71 147 77 SSF54189 none none IPR012678

0 Localization

0 Qtllist

0 Targeting