Protein : Qrob_P0073190.2 Q. robur
Protein Identifier  ? Qrob_P0073190.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=2) PTHR21535//PTHR21535:SF27 - MAGNESIUM AND COBALT TRANSPORT PROTEIN/MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 582  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0030001 metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0046873 metal ion transmembrane transporter activity Enables the transfer of metal ions from one side of a membrane to the other.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029553 10 580 + 571 Gaps:38 99.12 568 73.71 0.0 Magnesium transporter CorA-like family protein
blastp_kegg lcl|rcu:RCOM_0634270 1 581 + 581 Gaps:47 100.00 570 73.16 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014753mg 1 581 + 581 Gaps:38 99.82 568 73.02 0.0 hypothetical protein
blastp_kegg lcl|cit:102630391 1 581 + 581 Gaps:38 99.82 568 72.66 0.0 uncharacterized LOC102630391
blastp_kegg lcl|cam:101513629 9 581 + 573 Gaps:48 99.46 560 73.25 0.0 zinc transport protein ZntB-like
blastp_kegg lcl|mdm:103427869 1 581 + 581 Gaps:39 99.64 548 73.99 0.0 uncharacterized LOC103427869
blastp_kegg lcl|mdm:103434961 1 581 + 581 Gaps:39 99.64 548 73.99 0.0 uncharacterized LOC103434961
blastp_kegg lcl|pper:PRUPE_ppa004035mg 21 581 + 561 Gaps:60 99.81 534 74.48 0.0 hypothetical protein
blastp_kegg lcl|gmx:100796976 6 581 + 576 Gaps:41 99.64 555 72.88 0.0 uncharacterized LOC100796976
blastp_kegg lcl|pmum:103325020 1 581 + 581 Gaps:62 100.00 553 72.69 0.0 uncharacterized LOC103325020
rpsblast_cdd gnl|CDD|201848 346 523 + 178 Gaps:18 58.42 291 25.29 2e-08 pfam01544 CorA CorA-like Mg2+ transporter protein. The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.
rpsblast_cdd gnl|CDD|30943 171 514 + 344 Gaps:54 90.06 322 18.62 6e-08 COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 80 365 286 PTHR21535 none none none
Phobius 484 494 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 389 565 177 PTHR21535:SF27 none none none
Phobius 495 521 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 462 462 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 80 365 286 PTHR21535:SF27 none none none
Phobius 522 581 60 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 389 565 177 PTHR21535 none none none
SUPERFAMILY 459 512 54 SSF144083 none none none
Phobius 463 483 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 352 512 161 PF01544 none CorA-like Mg2+ transporter protein IPR002523
Gene3D 455 513 59 G3DSA:1.20.58.340 none none none

2 Localization

Analysis Start End Length
TMHMM 462 484 22
TMHMM 499 521 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting