Protein : Qrob_P0072860.2 Q. robur
Protein Identifier  ? Qrob_P0072860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K11836 - ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15] Code Enzyme  EC:3.4.19.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 182  
Kegg Orthology  K11836
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0036459 ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264052 1 181 + 181 Gaps:2 22.54 794 87.15 6e-105 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pxb:103965942 1 181 + 181 Gaps:5 21.76 809 87.50 1e-101 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|mdm:103448596 1 181 + 181 Gaps:5 21.81 807 87.50 2e-101 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pxb:103941538 1 181 + 181 Gaps:5 21.81 807 87.50 2e-101 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pxb:103965929 1 181 + 181 Gaps:5 21.41 822 87.50 2e-101 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|mdm:103429936 1 181 + 181 Gaps:5 21.81 807 86.93 2e-100 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|cic:CICLE_v10007478mg 1 181 + 181 Gaps:4 21.88 809 83.05 5e-100 hypothetical protein
blastp_kegg lcl|cit:102621591 1 181 + 181 Gaps:4 21.88 809 83.05 5e-100 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|mdm:103419025 1 181 + 181 Gaps:5 21.81 807 86.36 2e-99 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pmum:103326292 1 181 + 181 Gaps:5 21.76 809 84.66 2e-99 ubiquitin carboxyl-terminal hydrolase 14
blastp_pdb 3ihp_B 1 181 + 181 Gaps:12 22.60 854 45.08 2e-47 mol:protein length:854 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 3ihp_A 1 181 + 181 Gaps:12 22.60 854 45.08 2e-47 mol:protein length:854 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 1wiv_A 30 92 + 63 Gaps:6 78.08 73 75.44 8e-23 mol:protein length:73 ubiquitin-specific protease 14
blastp_pdb 1vek_A 1 46 + 46 none 54.76 84 76.09 4e-18 mol:protein length:84 ubiquitin-specific protease 14 putative
blastp_pdb 2lbc_A 1 101 + 101 Gaps:12 89.68 126 37.17 3e-16 mol:protein length:126 Ubiquitin carboxyl-terminal hydrolase 13
blastp_pdb 1whc_A 1 46 + 46 none 71.88 64 47.83 7e-09 mol:protein length:64 UBA/UBX 33.3 kDa protein
blastp_pdb 2dag_A 1 40 + 40 none 54.05 74 52.50 2e-08 mol:protein length:74 Ubiquitin carboxyl-terminal hydrolase 5
blastp_uniprot_sprot sp|Q8L6Y1|UBP14_ARATH 1 180 + 180 Gaps:7 21.71 797 73.41 4e-82 Ubiquitin carboxyl-terminal hydrolase 14 OS Arabidopsis thaliana GN UBP14 PE 1 SV 1
blastp_uniprot_sprot sp|P56399|UBP5_MOUSE 1 181 + 181 Gaps:12 22.49 858 45.08 7e-47 Ubiquitin carboxyl-terminal hydrolase 5 OS Mus musculus GN Usp5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R407|UBP5_PONAB 1 181 + 181 Gaps:12 22.49 858 45.08 7e-47 Ubiquitin carboxyl-terminal hydrolase 5 OS Pongo abelii GN UBP5 PE 2 SV 1
blastp_uniprot_sprot sp|P45974|UBP5_HUMAN 1 181 + 181 Gaps:12 22.49 858 45.08 8e-47 Ubiquitin carboxyl-terminal hydrolase 5 OS Homo sapiens GN USP5 PE 1 SV 2
blastp_uniprot_sprot sp|E1BY77|UBP13_CHICK 1 181 + 181 Gaps:23 23.67 862 41.18 3e-43 Ubiquitin carboxyl-terminal hydrolase 13 OS Gallus gallus GN USP13 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BKP2|UBP13_MOUSE 1 181 + 181 Gaps:16 22.96 858 41.62 1e-42 Ubiquitin carboxyl-terminal hydrolase 13 OS Mus musculus GN Usp13 PE 2 SV 1
blastp_uniprot_sprot sp|Q92995|UBP13_HUMAN 1 181 + 181 Gaps:19 23.17 863 41.00 3e-42 Ubiquitin carboxyl-terminal hydrolase 13 OS Homo sapiens GN USP13 PE 1 SV 2
blastp_uniprot_sprot sp|F1QFS9|UBP13_DANRE 1 181 + 181 Gaps:32 24.77 860 39.91 2e-41 Ubiquitin carboxyl-terminal hydrolase 13 OS Danio rerio GN usp13 PE 2 SV 1
blastp_uniprot_sprot sp|E1BMF7|UBP13_BOVIN 1 181 + 181 Gaps:19 23.17 863 41.00 2e-41 Ubiquitin carboxyl-terminal hydrolase 13 OS Bos taurus GN USP13 PE 3 SV 2
blastp_uniprot_sprot sp|P54201|UBPA_DICDI 1 178 + 178 Gaps:19 23.30 837 39.49 5e-39 Ubiquitin carboxyl-terminal hydrolase A OS Dictyostelium discoideum GN ubpA PE 2 SV 2
rpsblast_cdd gnl|CDD|34804 1 179 + 179 Gaps:9 24.30 749 31.32 3e-31 COG5207 UBP14 Isopeptidase T [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|73064 106 177 + 72 Gaps:10 26.37 311 47.56 2e-22 cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates which could rescue them from degradation as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell and with over 50 members family C19 is one of the largest families of peptidases in the human genome..
rpsblast_cdd gnl|CDD|201230 122 176 + 55 Gaps:6 18.85 313 32.20 1e-11 pfam00443 UCH Ubiquitin carboxyl-terminal hydrolase.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 1 179 179 PS50235 none Ubiquitin specific protease (USP) domain profile. IPR028889
Pfam 54 89 36 PF00627 none UBA/TS-N domain IPR000449
ProSiteProfiles 1 30 30 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
PANTHER 30 38 9 PTHR24006 none none none
PANTHER 80 180 101 PTHR24006 none none none
SUPERFAMILY 1 42 42 SSF46934 none none IPR009060
ProSitePatterns 124 142 19 PS00973 none Ubiquitin specific protease (USP) domain signature 2. IPR018200
ProSiteProfiles 52 92 41 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
Gene3D 21 94 74 G3DSA:1.10.8.10 none none none
PANTHER 30 38 9 PTHR24006:SF348 none none none
PANTHER 80 180 101 PTHR24006:SF348 none none none
SUPERFAMILY 53 178 126 SSF54001 none none none
SMART 54 91 38 SM00165 none Ubiquitin associated domain IPR015940
SMART 1 29 29 SM00165 none Ubiquitin associated domain IPR015940
Pfam 104 175 72 PF00443 none Ubiquitin carboxyl-terminal hydrolase IPR001394

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting