Protein : Qrob_P0072840.2 Q. robur
Protein Identifier  ? Qrob_P0072840.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=2) K11836 - ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15] Code Enzyme  EC:3.4.19.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 631  
Kegg Orthology  K11836
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0036459 ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001521mg 1 611 + 611 Gaps:24 75.03 809 84.02 0.0 hypothetical protein
blastp_kegg lcl|pxb:103965942 1 614 + 614 Gaps:24 75.40 809 83.11 0.0 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|fve:101311838 1 613 + 613 Gaps:24 75.19 810 82.92 0.0 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pxb:103965929 1 614 + 614 Gaps:37 75.79 822 81.38 0.0 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pmum:103326292 1 611 + 611 Gaps:24 75.03 809 83.03 0.0 ubiquitin carboxyl-terminal hydrolase 14
blastp_kegg lcl|tcc:TCM_031292 3 613 + 611 Gaps:25 74.38 812 85.10 0.0 Ubiquitin-specific protease 14 isoform 1
blastp_kegg lcl|pop:POPTR_0001s41930g 5 613 + 609 Gaps:24 74.97 807 83.31 0.0 TITAN6 family protein
blastp_kegg lcl|mdm:103448596 1 605 + 605 Gaps:24 74.47 807 83.19 0.0 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pxb:103941538 1 605 + 605 Gaps:24 74.47 807 83.03 0.0 ubiquitin carboxyl-terminal hydrolase 14-like
blastp_kegg lcl|pvu:PHAVU_011G156100g 3 614 + 612 Gaps:24 75.06 810 81.91 0.0 hypothetical protein
blastp_pdb 3ihp_B 6 613 + 608 Gaps:44 71.43 854 51.15 0.0 mol:protein length:854 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 3ihp_A 6 613 + 608 Gaps:44 71.43 854 51.15 0.0 mol:protein length:854 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 2g45_D 148 291 + 144 Gaps:16 99.22 129 61.72 2e-48 mol:protein length:129 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 2g45_A 148 291 + 144 Gaps:16 99.22 129 61.72 2e-48 mol:protein length:129 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 2g43_B 148 291 + 144 Gaps:16 99.22 129 61.72 2e-48 mol:protein length:129 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 2g43_A 148 291 + 144 Gaps:16 99.22 129 61.72 2e-48 mol:protein length:129 Ubiquitin carboxyl-terminal hydrolase 5
blastp_pdb 2l80_A 160 290 + 131 Gaps:16 99.14 116 60.00 1e-39 mol:protein length:116 Ubiquitin carboxyl-terminal hydrolase 13
blastp_uniprot_sprot sp|Q8L6Y1|UBP14_ARATH 5 614 + 610 Gaps:29 75.41 797 78.04 0.0 Ubiquitin carboxyl-terminal hydrolase 14 OS Arabidopsis thaliana GN UBP14 PE 1 SV 1
blastp_uniprot_sprot sp|P56399|UBP5_MOUSE 6 613 + 608 Gaps:44 71.10 858 51.15 0.0 Ubiquitin carboxyl-terminal hydrolase 5 OS Mus musculus GN Usp5 PE 1 SV 1
blastp_uniprot_sprot sp|P45974|UBP5_HUMAN 6 613 + 608 Gaps:44 71.10 858 51.15 0.0 Ubiquitin carboxyl-terminal hydrolase 5 OS Homo sapiens GN USP5 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R407|UBP5_PONAB 8 613 + 606 Gaps:44 70.86 858 50.99 0.0 Ubiquitin carboxyl-terminal hydrolase 5 OS Pongo abelii GN UBP5 PE 2 SV 1
blastp_uniprot_sprot sp|F1QFS9|UBP13_DANRE 2 613 + 612 Gaps:39 70.81 860 44.01 2e-180 Ubiquitin carboxyl-terminal hydrolase 13 OS Danio rerio GN usp13 PE 2 SV 1
blastp_uniprot_sprot sp|E1BMF7|UBP13_BOVIN 6 613 + 608 Gaps:39 69.87 863 45.77 6e-179 Ubiquitin carboxyl-terminal hydrolase 13 OS Bos taurus GN USP13 PE 3 SV 2
blastp_uniprot_sprot sp|Q92995|UBP13_HUMAN 6 613 + 608 Gaps:39 69.87 863 45.94 2e-178 Ubiquitin carboxyl-terminal hydrolase 13 OS Homo sapiens GN USP13 PE 1 SV 2
blastp_uniprot_sprot sp|E1BY77|UBP13_CHICK 6 611 + 606 Gaps:39 69.72 862 46.76 1e-175 Ubiquitin carboxyl-terminal hydrolase 13 OS Gallus gallus GN USP13 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BKP2|UBP13_MOUSE 6 613 + 608 Gaps:39 70.28 858 45.44 3e-175 Ubiquitin carboxyl-terminal hydrolase 13 OS Mus musculus GN Usp13 PE 2 SV 1
blastp_uniprot_sprot sp|F6V6I0|UBP13_XENTR 3 611 + 609 Gaps:39 71.39 846 44.54 2e-171 Ubiquitin carboxyl-terminal hydrolase 13 OS Xenopus tropicalis GN usp13 PE 3 SV 2
rpsblast_cdd gnl|CDD|73064 327 602 + 276 Gaps:32 84.89 311 53.03 7e-86 cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates which could rescue them from degradation as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell and with over 50 members family C19 is one of the largest families of peptidases in the human genome..
rpsblast_cdd gnl|CDD|34804 5 621 + 617 Gaps:93 74.50 749 25.45 8e-61 COG5207 UBP14 Isopeptidase T [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|201230 323 609 + 287 Gaps:60 80.83 313 26.09 5e-37 pfam00443 UCH Ubiquitin carboxyl-terminal hydrolase.

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 258 496 239 PTHR24006 none none none
PANTHER 5 241 237 PTHR24006 none none none
ProSiteProfiles 182 270 89 PS50271 none Zinc finger UBP-type profile. IPR001607
SMART 183 238 56 SM00290 none Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger IPR001607
SUPERFAMILY 162 284 123 SSF57850 none none none
Gene3D 178 291 114 G3DSA:3.30.40.10 none none IPR013083
PANTHER 522 613 92 PTHR24006:SF348 none none none
PANTHER 5 241 237 PTHR24006:SF348 none none none
ProSitePatterns 327 342 16 PS00972 none Ubiquitin specific protease (USP) domain signature 1. IPR018200
Pfam 325 603 279 PF00443 none Ubiquitin carboxyl-terminal hydrolase IPR001394
PANTHER 258 496 239 PTHR24006:SF348 none none none
ProSiteProfiles 326 630 305 PS50235 none Ubiquitin specific protease (USP) domain profile. IPR028889
Pfam 184 271 88 PF02148 none Zn-finger in ubiquitin-hydrolases and other protein IPR001607
SUPERFAMILY 322 496 175 SSF54001 none none none
SUPERFAMILY 529 613 85 SSF54001 none none none
PANTHER 522 613 92 PTHR24006 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting