Protein : Qrob_P0071200.2 Q. robur
Protein Identifier  ? Qrob_P0071200.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=2) K02951 - small subunit ribosomal protein S12e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 155  
Kegg Orthology  K02951
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102613535 45 150 + 106 Gaps:5 73.05 141 83.50 7e-52 40S ribosomal protein S12-like
blastp_kegg lcl|cic:CICLE_v10026727mg 45 150 + 106 Gaps:5 73.05 141 83.50 1e-51 hypothetical protein
blastp_kegg lcl|sot:102598170 46 150 + 105 none 73.43 143 80.00 2e-51 40S ribosomal protein S12-like
blastp_kegg lcl|sly:101247070 46 150 + 105 none 73.43 143 80.00 3e-51 40S ribosomal protein S12-like
blastp_kegg lcl|pop:POPTR_0002s05710g 63 150 + 88 none 60.69 145 87.50 6e-50 POPTRDRAFT_551211 40S ribosomal protein S12-1
blastp_kegg lcl|vvi:100255187 55 150 + 96 Gaps:2 69.01 142 83.67 2e-49 40S ribosomal protein S12-like
blastp_kegg lcl|pop:POPTR_0001s14870g 46 150 + 105 Gaps:2 73.43 143 79.05 3e-49 POPTRDRAFT_838569 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s22790g 56 150 + 95 none 65.07 146 80.00 1e-48 POPTRDRAFT_714910 40S ribosomal protein S12-1
blastp_kegg lcl|rcu:RCOM_0470890 63 150 + 88 none 60.69 145 86.36 1e-48 40S ribosomal protein S12 putative
blastp_kegg lcl|vvi:100265590 63 150 + 88 none 62.86 140 84.09 4e-48 40S ribosomal protein S12-like
blastp_pdb 2xzn_U 74 146 + 73 none 57.94 126 42.47 2e-14 mol:protein length:126 RIBOSOMAL PROTEIN L7AE CONTAINING PROTEIN
blastp_pdb 2xzm_U 74 146 + 73 none 57.94 126 42.47 2e-14 mol:protein length:126 RIBOSOMAL PROTEIN L7AE CONTAINING PROTEIN
blastp_pdb 3u5g_M 70 150 + 81 Gaps:2 58.04 143 44.58 2e-14 mol:protein length:143 40S ribosomal protein S12
blastp_pdb 3u5c_M 70 150 + 81 Gaps:2 58.04 143 44.58 2e-14 mol:protein length:143 40S ribosomal protein S12
blastp_pdb 2fc3_A 78 148 + 71 none 57.26 124 35.21 2e-08 mol:protein length:124 50S ribosomal protein L7Ae
blastp_uniprot_sprot sp|Q9XHS0|RS12_HORVU 48 150 + 103 Gaps:5 72.73 143 73.08 1e-43 40S ribosomal protein S12 OS Hordeum vulgare GN RPS12 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKZ3|RS122_ARATH 66 150 + 85 none 59.03 144 74.12 2e-40 40S ribosomal protein S12-2 OS Arabidopsis thaliana GN RPS12C PE 2 SV 1
blastp_uniprot_sprot sp|Q9S9P1|RS121_ARATH 66 150 + 85 none 59.03 144 74.12 1e-39 40S ribosomal protein S12-1 OS Arabidopsis thaliana GN RPS12A PE 2 SV 1
blastp_uniprot_sprot sp|Q9SMI3|RS12_CYAPA 52 150 + 99 none 72.79 136 48.48 5e-26 40S ribosomal protein S12 OS Cyanophora paradoxa GN RPS12 PE 2 SV 1
blastp_uniprot_sprot sp|P84175|RS12_CHICK 65 150 + 86 none 65.15 132 52.33 3e-25 40S ribosomal protein S12 OS Gallus gallus GN RPS12 PE 1 SV 2
blastp_uniprot_sprot sp|P46405|RS12_PIG 65 150 + 86 none 65.15 132 52.33 4e-25 40S ribosomal protein S12 OS Sus scrofa GN RPS12 PE 2 SV 2
blastp_uniprot_sprot sp|P25398|RS12_HUMAN 65 150 + 86 none 65.15 132 52.33 4e-25 40S ribosomal protein S12 OS Homo sapiens GN RPS12 PE 1 SV 3
blastp_uniprot_sprot sp|Q76I81|RS12_BOVIN 65 150 + 86 none 65.15 132 52.33 4e-25 40S ribosomal protein S12 OS Bos taurus GN RPS12 PE 2 SV 1
blastp_uniprot_sprot sp|Q54PX9|RS12_DICDI 63 150 + 88 none 64.71 136 48.86 1e-24 40S ribosomal protein S12 OS Dictyostelium discoideum GN rps12 PE 1 SV 1
blastp_uniprot_sprot sp|P47840|RS12_XENLA 65 150 + 86 none 65.15 132 51.16 1e-23 40S ribosomal protein S12 OS Xenopus laevis GN rps12 PE 2 SV 2
rpsblast_cdd gnl|CDD|201684 72 148 + 77 none 81.05 95 42.86 5e-18 pfam01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family. This family includes: Ribosomal L7A from metazoa Ribosomal L8-A and L8-B from fungi 30S ribosomal protein HS6 from archaebacteria 40S ribosomal protein S12 from eukaryotes Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.
rpsblast_cdd gnl|CDD|31549 61 150 + 90 Gaps:1 76.72 116 35.96 2e-11 COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|38616 53 150 + 98 none 73.13 134 51.02 8e-28 KOG3406 KOG3406 KOG3406 40S ribosomal protein S12 [Translation ribosomal structure and biogenesis].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 91 107 17 PR00972 none Ribosomal protein S12E family signature IPR000530
PRINTS 77 90 14 PR00972 none Ribosomal protein S12E family signature IPR000530
PRINTS 132 153 22 PR00972 none Ribosomal protein S12E family signature IPR000530
Gene3D 69 148 80 G3DSA:3.30.1330.30 none none IPR029064
PANTHER 45 146 102 PTHR11843 none none IPR000530
SUPERFAMILY 66 148 83 SSF55315 none none IPR029064
ProSitePatterns 73 91 19 PS01189 none Ribosomal protein S12e signature. IPR000530
Pfam 73 148 76 PF01248 none Ribosomal protein L7Ae/L30e/S12e/Gadd45 family IPR004038

0 Localization

0 Qtllist

0 Targeting