Protein : Qrob_P0070400.2 Q. robur
Protein Identifier  ? Qrob_P0070400.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K03124 - transcription initiation factor TFIIB Gene Prediction Quality  validated
Protein length 

Sequence

Length: 288  
Kegg Orthology  K03124
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0017025 TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040769 1 285 + 285 Gaps:25 99.36 312 74.84 2e-168 Cyclin-like family protein
blastp_kegg lcl|vvi:100266630 1 285 + 285 Gaps:25 99.36 312 74.52 7e-167 transcription initiation factor IIB-2-like
blastp_kegg lcl|vvi:100267614 1 285 + 285 Gaps:25 99.36 312 74.19 2e-166 transcription initiation factor IIB-2-like
blastp_kegg lcl|sot:102593687 3 284 + 282 Gaps:25 98.71 311 74.27 3e-165 transcription initiation factor IIB-2-like
blastp_kegg lcl|sly:101246877 3 284 + 282 Gaps:25 98.71 311 74.27 3e-165 transcription initiation factor IIB-2-like
blastp_kegg lcl|cit:102629446 1 285 + 285 Gaps:25 99.36 312 73.55 9e-165 transcription initiation factor IIB-2-like
blastp_kegg lcl|cmo:103495880 1 285 + 285 Gaps:25 99.36 312 72.90 2e-164 transcription initiation factor IIB-2
blastp_kegg lcl|csv:101209725 1 285 + 285 Gaps:25 99.36 312 72.90 2e-164 transcription initiation factor IIB-2-like
blastp_kegg lcl|cit:102625162 1 284 + 284 Gaps:26 99.36 312 73.55 2e-164 transcription initiation factor IIB-like
blastp_kegg lcl|rcu:RCOM_1578680 1 285 + 285 Gaps:25 99.36 312 72.90 2e-164 transcription initiation factor iib putative
blastp_pdb 1c9b_Q 101 275 + 175 Gaps:32 94.20 207 44.62 8e-39 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_M 101 275 + 175 Gaps:32 94.20 207 44.62 8e-39 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_I 101 275 + 175 Gaps:32 94.20 207 44.62 8e-39 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_E 101 275 + 175 Gaps:32 94.20 207 44.62 8e-39 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_A 101 275 + 175 Gaps:32 94.20 207 44.62 8e-39 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1tfb_A 101 275 + 175 Gaps:32 93.75 208 43.59 2e-37 mol:protein length:208 TFIIB
blastp_pdb 2phg_A 103 275 + 173 Gaps:32 93.69 206 44.04 2e-37 mol:protein length:206 Transcription initiation factor IIB
blastp_pdb 3k7a_M 4 279 + 276 Gaps:37 90.14 345 33.76 9e-37 mol:protein length:345 Transcription initiation factor IIB
blastp_pdb 1vol_A 105 275 + 171 Gaps:32 93.63 204 42.93 9e-36 mol:protein length:204 PROTEIN (TRANSCRIPTION FACTOR IIB (TFIIB))
blastp_pdb 1ais_B 118 272 + 155 Gaps:18 82.50 200 30.91 2e-18 mol:protein length:200 PROTEIN (TRANSCRIPTION INITIATION FACTOR IIB)
blastp_uniprot_sprot sp|Q9SS44|TF2B2_ARATH 1 284 + 284 Gaps:25 99.04 312 72.82 2e-164 Transcription initiation factor IIB-2 OS Arabidopsis thaliana GN TFIIB2 PE 2 SV 1
blastp_uniprot_sprot sp|P48513|TF2B_SOYBN 1 285 + 285 Gaps:26 99.36 313 72.35 1e-162 Transcription initiation factor IIB OS Glycine max GN TFIIB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W0W3|TF2B_ORYSJ 1 285 + 285 Gaps:25 99.36 312 70.97 2e-160 Transcription initiation factor IIB OS Oryza sativa subsp. japonica GN TFIIB PE 1 SV 1
blastp_uniprot_sprot sp|P48512|TF2B1_ARATH 1 284 + 284 Gaps:25 99.04 312 67.96 3e-153 Transcription initiation factor IIB-1 OS Arabidopsis thaliana GN TFIIB1 PE 1 SV 1
blastp_uniprot_sprot sp|P29052|TF2B_DROME 13 275 + 263 Gaps:35 90.16 315 46.83 2e-70 Transcription initiation factor IIB OS Drosophila melanogaster GN TfIIB PE 2 SV 1
blastp_uniprot_sprot sp|P29054|TF2B_XENLA 15 275 + 261 Gaps:35 89.24 316 46.81 1e-68 Transcription initiation factor IIB OS Xenopus laevis GN gtf2b PE 2 SV 1
blastp_uniprot_sprot sp|P62916|TF2B_RAT 15 275 + 261 Gaps:35 89.24 316 47.16 9e-68 Transcription initiation factor IIB OS Rattus norvegicus GN Gtf2b PE 2 SV 1
blastp_uniprot_sprot sp|P62915|TF2B_MOUSE 15 275 + 261 Gaps:35 89.24 316 47.16 9e-68 Transcription initiation factor IIB OS Mus musculus GN Gtf2b PE 1 SV 1
blastp_uniprot_sprot sp|Q5R886|TF2B_PONAB 15 275 + 261 Gaps:35 89.24 316 46.81 2e-67 Transcription initiation factor IIB OS Pongo abelii GN GTF2B PE 2 SV 1
blastp_uniprot_sprot sp|Q4R3J5|TF2B_MACFA 15 275 + 261 Gaps:35 89.24 316 46.81 2e-67 Transcription initiation factor IIB OS Macaca fascicularis GN GTF2B PE 2 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 188 256 69 PF00382 "Reactome:REACT_1788" Transcription factor TFIIB repeat IPR013150
Pfam 119 156 38 PF00382 "Reactome:REACT_1788" Transcription factor TFIIB repeat IPR013150
ProSitePatterns 132 147 16 PS00782 none Transcription factor TFIIB repeat signature. IPR023486
Gene3D 4 50 47 G3DSA:2.20.25.10 none none none
Gene3D 176 275 100 G3DSA:1.10.472.10 none none IPR013763
Gene3D 118 156 39 G3DSA:1.10.472.10 none none IPR013763
SUPERFAMILY 119 173 55 SSF47954 none none IPR013763
ProSiteProfiles 2 34 33 PS51134 "Reactome:REACT_1788" Zinc finger TFIIB-type profile. IPR013137
Pfam 5 47 43 PF08271 "Reactome:REACT_1788" TFIIB zinc-binding IPR013137
SUPERFAMILY 182 284 103 SSF47954 none none IPR013763
SUPERFAMILY 4 50 47 SSF57783 none none none
PRINTS 154 169 16 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 41 54 14 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 187 205 19 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 19 39 21 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 219 235 17 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 251 265 15 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PANTHER 4 276 273 PTHR11618 "Reactome:REACT_1788";signature_desc=TRANSCRIPTION INITIATION FACTOR IIB-RELATED none IPR000812

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting