Protein : Qrob_P0070320.2 Q. robur
Protein Identifier  ? Qrob_P0070320.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=10) PTHR12565//PTHR12565:SF70 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED (PTHR12565:SF70) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 285  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102623252 1 284 + 284 Gaps:10 99.28 278 80.07 2e-145 transcription factor bHLH79-like
blastp_kegg lcl|tcc:TCM_045748 1 284 + 284 Gaps:13 100.00 283 76.68 1e-142 Basic helix-loop-helix DNA-binding superfamily protein
blastp_kegg lcl|mdm:103437779 1 284 + 284 Gaps:3 97.60 292 79.30 2e-140 transcription factor bHLH79-like
blastp_kegg lcl|pmum:103338263 1 284 + 284 Gaps:9 100.00 279 78.14 3e-139 transcription factor bHLH79
blastp_kegg lcl|pxb:103958790 1 284 + 284 Gaps:6 97.63 295 78.12 2e-138 transcription factor bHLH79-like
blastp_kegg lcl|pxb:103938454 1 284 + 284 Gaps:6 97.63 295 78.12 7e-138 transcription factor bHLH79-like
blastp_kegg lcl|pper:PRUPE_ppa009757mg 1 284 + 284 Gaps:9 100.00 279 78.85 1e-135 hypothetical protein
blastp_kegg lcl|cmo:103493956 1 284 + 284 Gaps:10 100.00 276 75.36 9e-135 transcription factor bHLH79
blastp_kegg lcl|mdm:103455274 1 284 + 284 Gaps:4 100.00 284 76.06 3e-134 transcription factor bHLH79-like
blastp_kegg lcl|fve:101311284 1 284 + 284 Gaps:12 100.00 274 77.37 9e-134 transcription factor bHLH79-like
blastp_uniprot_sprot sp|Q9LV17|BH079_ARATH 1 284 + 284 Gaps:11 100.00 281 58.01 7e-88 Transcription factor bHLH79 OS Arabidopsis thaliana GN BHLH79 PE 2 SV 1
blastp_uniprot_sprot sp|Q0JXE7|BPE_ARATH 19 244 + 226 Gaps:24 61.22 343 61.43 8e-62 Transcription factor BPE OS Arabidopsis thaliana GN BPE PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK48|BH077_ARATH 80 233 + 154 Gaps:20 41.51 371 64.29 1e-45 Transcription factor bHLH77 OS Arabidopsis thaliana GN BHLH77 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SRT2|BH062_ARATH 149 244 + 96 Gaps:2 20.61 456 80.85 2e-45 Transcription factor bHLH62 OS Arabidopsis thaliana GN BHLH62 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAA9|BH049_ARATH 58 243 + 186 Gaps:18 37.45 486 53.30 3e-44 Transcription factor bHLH49 OS Arabidopsis thaliana GN BHLH49 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJL4|BH078_ARATH 142 244 + 103 Gaps:4 20.28 498 78.22 3e-44 Transcription factor bHLH78 OS Arabidopsis thaliana GN BHLH78 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C670|BH076_ARATH 69 233 + 165 Gaps:16 38.21 390 56.38 8e-43 Transcription factor bHLH76 OS Arabidopsis thaliana GN BHLH76 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY61|BH063_ARATH 60 229 + 170 Gaps:9 51.64 335 49.13 2e-42 Transcription factor bHLH63 OS Arabidopsis thaliana GN BHLH63 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NKN9|BH074_ARATH 140 244 + 105 Gaps:2 28.14 366 68.93 4e-41 Transcription factor bHLH74 OS Arabidopsis thaliana GN BHLH74 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPW3|BH064_ARATH 110 232 + 123 none 36.50 337 59.35 4e-40 Transcription factor bHLH64 OS Arabidopsis thaliana GN BHLH64 PE 2 SV 3
rpsblast_cdd gnl|CDD|197674 168 217 + 50 Gaps:2 98.11 53 40.38 2e-09 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|28964 160 217 + 58 Gaps:2 100.00 60 35.00 1e-07 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..
rpsblast_cdd gnl|CDD|200925 166 213 + 48 Gaps:1 94.23 52 34.69 4e-07 pfam00010 HLH Helix-loop-helix DNA-binding domain.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 166 213 48 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
PANTHER 52 276 225 PTHR12565:SF70 none none IPR031064
Gene3D 162 232 71 G3DSA:4.10.280.10 none none IPR011598
PANTHER 52 276 225 PTHR12565 none none none
ProSiteProfiles 162 212 51 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
SUPERFAMILY 160 232 73 SSF47459 none none IPR011598
Coils 209 230 22 Coil none none none
SMART 168 218 51 SM00353 none helix loop helix domain IPR011598

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting