Protein : Qrob_P0070100.2 Q. robur
Protein Identifier  ? Qrob_P0070100.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) PTHR12374//PTHR12374:SF19 - TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED // SUBFAMILY NOT NAMED (PTHR12374:SF19) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 312  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009283mg 8 311 + 304 Gaps:16 97.32 298 73.79 1e-123 hypothetical protein
blastp_kegg lcl|mdm:103437771 5 310 + 306 Gaps:23 99.67 300 67.56 3e-112 MYBR9 transcription factor MYB1R1-like
blastp_kegg lcl|rcu:RCOM_1512870 14 311 + 298 Gaps:17 93.73 319 69.90 5e-111 DNA binding protein putative
blastp_kegg lcl|mdm:103424517 5 311 + 307 Gaps:25 100.00 302 66.23 2e-103 transcription factor MYB1R1-like
blastp_kegg lcl|mdm:103415249 5 311 + 307 Gaps:25 100.00 302 65.89 2e-102 transcription factor MYB1R1-like
blastp_kegg lcl|pxb:103958803 5 311 + 307 Gaps:23 100.00 300 64.67 4e-102 transcription factor MYB1R1
blastp_kegg lcl|fve:101303806 14 311 + 298 Gaps:22 94.28 297 68.21 1e-101 transcription factor MYB1R1-like
blastp_kegg lcl|tcc:TCM_013524 14 311 + 298 Gaps:32 91.33 300 71.17 1e-99 Homeodomain-like superfamily protein putative
blastp_kegg lcl|cit:102619886 11 311 + 301 Gaps:46 96.01 301 67.82 2e-98 transcription factor MYB1R1-like
blastp_kegg lcl|pvu:PHAVU_003G195700g 7 311 + 305 Gaps:17 97.66 299 63.36 3e-98 hypothetical protein
blastp_uniprot_sprot sp|Q2V9B0|MY1R1_SOLTU 13 311 + 299 Gaps:27 92.93 297 59.42 8e-72 Transcription factor MYB1R1 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q8S9H7|DIV_ANTMA 69 163 + 95 Gaps:1 30.62 307 61.70 2e-31 Transcription factor DIVARICATA OS Antirrhinum majus GN DIVARICATA PE 2 SV 1
blastp_uniprot_sprot sp|Q869R9|MYBJ_DICDI 89 162 + 74 Gaps:5 9.40 734 49.28 4e-12 Myb-like protein J OS Dictyostelium discoideum GN mybJ PE 3 SV 1
blastp_uniprot_sprot sp|Q54HX6|MYBI_DICDI 64 155 + 92 Gaps:6 8.80 977 40.70 6e-09 Myb-like protein I OS Dictyostelium discoideum GN mybI PE 3 SV 1
blastp_uniprot_sprot sp|Q54Z40|MYBH_DICDI 97 143 + 47 Gaps:1 3.78 1217 43.48 1e-06 Myb-like protein H OS Dictyostelium discoideum GN mybH PE 3 SV 1
rpsblast_cdd gnl|CDD|130620 94 146 + 53 Gaps:4 100.00 57 45.61 4e-13 TIGR01557 myb_SHAQKYF myb-like DNA-binding domain SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
rpsblast_cdd gnl|CDD|201113 98 142 + 45 Gaps:1 93.62 47 31.82 4e-07 pfam00249 Myb_DNA-binding Myb-like DNA-binding domain. This family contains the DNA binding domains from Myb proteins as well as the SANT domain family.
rpsblast_kog gnl|CDD|35943 45 166 + 122 Gaps:17 34.33 335 41.74 1e-12 KOG0724 KOG0724 KOG0724 Zuotin and related molecular chaperones (DnaJ superfamily) contains DNA-binding domains [Posttranslational modification protein turnover chaperones].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 91 147 57 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
PANTHER 14 188 175 PTHR12374 none none none
Gene3D 97 142 46 G3DSA:1.10.10.60 none none IPR009057
SMART 95 145 51 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
PANTHER 14 188 175 PTHR12374:SF19 none none none
Pfam 98 142 45 PF00249 none Myb-like DNA-binding domain IPR001005
TIGRFAM 94 145 52 TIGR01557 none myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class IPR006447
SUPERFAMILY 93 147 55 SSF46689 none none IPR009057

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting