Protein : Qrob_P0069850.2 Q. robur
Protein Identifier  ? Qrob_P0069850.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR11058//PTHR11058:SF7 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3 // SUBFAMILY NOT NAMED Code Enzyme  EC:1.6.5.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 167  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_1g005040 1 166 + 166 Gaps:16 50.28 362 72.53 1e-74 NADH-ubiquinone oxidoreductase chain
blastp_kegg lcl|mdm:13630211 3 106 + 104 Gaps:14 100.00 118 73.73 5e-50 nad3 C3258_p21 nad3
blastp_kegg lcl|vvi:7498617 3 106 + 104 Gaps:14 100.00 118 73.73 6e-50 nad3 ViviM_p080 NADH dehydrogenase subunit 3
blastp_kegg lcl|csv:11123864 3 106 + 104 Gaps:14 100.00 118 72.88 1e-47 nad3 CusaM_p13 NADH dehydrogenase subunit 3
blastp_kegg lcl|rcu:RCOM_Mp33 3 106 + 104 Gaps:14 100.00 118 72.03 3e-47 nad3 NADH dehydrogenase subunit 3
blastp_kegg lcl|sbi:SobioMp05 3 106 + 104 Gaps:14 100.00 118 71.19 3e-46 nad3 NADH dehydrogenase subunit 3
blastp_kegg lcl|pda:11542580 3 106 + 104 Gaps:14 100.00 118 68.64 1e-44 nad3 DP_nd3 NADH dehydrogenase subunit 3
blastp_kegg lcl|gmx:15308563 3 106 + 104 Gaps:14 100.00 118 72.88 6e-42 nad3 GlmaxMp15 NADH dehydrogenase subunit 3
blastp_kegg lcl|mus:103973020 3 106 + 104 Gaps:14 100.00 118 66.95 1e-41 NADH-ubiquinone oxidoreductase chain 3
blastp_kegg lcl|cam:101509836 3 106 + 104 Gaps:14 100.00 118 72.03 2e-41 NADH-ubiquinone oxidoreductase chain 3-like
blastp_pdb 3uoq_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3sfs_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12 1
blastp_pdb 3ora_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3or9_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3kc4_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3izw_P 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3izv_P 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3i21_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3i1z_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3i1s_L 108 166 + 59 none 47.58 124 50.85 5e-11 mol:protein length:124 30S ribosomal protein S12
blastp_uniprot_sprot sp|P27062|NU3M_PANGI 3 106 + 104 Gaps:14 100.00 118 73.73 2e-51 NADH-ubiquinone oxidoreductase chain 3 OS Panax ginseng GN ND3 PE 3 SV 1
blastp_uniprot_sprot sp|O99869|NU3M_SOLTU 3 106 + 104 Gaps:14 100.00 118 72.03 3e-49 NADH-ubiquinone oxidoreductase chain 3 OS Solanum tuberosum GN ND3 PE 3 SV 1
blastp_uniprot_sprot sp|Q36664|NU3M_PINSY 3 106 + 104 Gaps:14 100.00 118 71.19 4e-47 NADH-ubiquinone oxidoreductase chain 3 OS Pinus sylvestris GN NAD3 PE 2 SV 2
blastp_uniprot_sprot sp|P60160|NU3M_WHEAT 3 106 + 104 Gaps:14 100.00 118 71.19 3e-40 NADH-ubiquinone oxidoreductase chain 3 OS Triticum aestivum GN ND3 PE 2 SV 1
blastp_uniprot_sprot sp|P60159|NU3M_HELAN 3 106 + 104 Gaps:14 100.00 118 71.19 3e-40 NADH-ubiquinone oxidoreductase chain 3 OS Helianthus annuus GN ND3 PE 2 SV 1
blastp_uniprot_sprot sp|P16265|NU3M_MAIZE 3 106 + 104 Gaps:14 100.00 118 71.19 4e-40 NADH-ubiquinone oxidoreductase chain 3 OS Zea mays GN ND3 PE 2 SV 3
blastp_uniprot_sprot sp|Q96007|NU3M_ALLCE 3 106 + 104 Gaps:16 100.00 118 67.80 4e-40 NADH-ubiquinone oxidoreductase chain 3 OS Allium cepa GN ND3 PE 3 SV 1
blastp_uniprot_sprot sp|P68159|NU3M_RAPSA 2 106 + 105 Gaps:14 100.00 119 68.07 5e-38 NADH-ubiquinone oxidoreductase chain 3 OS Raphanus sativus GN ND3 PE 2 SV 1
blastp_uniprot_sprot sp|P68160|NU3M_BRANA 2 106 + 105 Gaps:14 100.00 119 68.07 5e-38 NADH-ubiquinone oxidoreductase chain 3 OS Brassica napus GN ND3 PE 2 SV 1
blastp_uniprot_sprot sp|P92533|NU3M_ARATH 2 106 + 105 Gaps:14 100.00 119 68.07 5e-38 NADH-ubiquinone oxidoreductase chain 3 OS Arabidopsis thaliana GN ND3 PE 2 SV 2

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 25 107 83 PTHR11058:SF7 none none none
Pfam 109 166 58 PF00164 none Ribosomal protein S12/S23 IPR006032
Phobius 26 45 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 13 104 92 PF00507 none NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IPR000440
PRINTS 149 164 16 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 134 149 16 PR01034 none Ribosomal protein S12 signature IPR005679
Phobius 6 25 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 109 166 58 SSF50249 none none IPR012340
Phobius 67 77 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 107 166 60 G3DSA:2.40.50.140 none none IPR012340
PANTHER 25 107 83 PTHR11058 none none IPR000440
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 78 96 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 46 66 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 97 166 70 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

3 Localization

Analysis Start End Length
TMHMM 77 96 19
TMHMM 48 70 22
TMHMM 2 24 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 29   Secretory pathway 1 0.986 0.014 NON-PLANT 29