Protein : Qrob_P0069050.2 Q. robur
Protein Identifier  ? Qrob_P0069050.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) K02959 - small subunit ribosomal protein S16 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 92  
Kegg Orthology  K02959
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0009536 plastid Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:18667995 18 91 + 74 none 85.06 87 85.14 2e-38 rps16 CP95_p085 ribosomal protein S16
blastp_kegg lcl|pper:PrpeC_p003 18 91 + 74 none 83.15 89 83.78 1e-37 rps16 ribosomal protein S16
blastp_kegg lcl|fve:10251483 18 91 + 74 none 83.15 89 82.43 2e-36 rps16 FvH4_C0005 ribosomal protein S16
blastp_kegg lcl|gmx:3989305 18 91 + 74 none 83.15 89 79.73 1e-35 rps16 GlmaCp029 ribosomal protein S16
blastp_kegg lcl|vvi:4025122 18 91 + 74 Gaps:1 82.42 91 81.33 3e-34 rps16 ViviCp003 ribosomal protein S16
blastp_kegg lcl|tcc:ThcaC_p003 18 91 + 74 Gaps:1 82.95 88 82.19 7e-34 rps16 ribosomal protein S16
blastp_kegg lcl|csv:3429310 18 86 + 69 none 82.14 84 82.61 3e-33 rps16 CsCp004 ribosomal protein S16
blastp_kegg lcl|cit:4271244 18 86 + 69 none 78.41 88 79.71 3e-32 rps16 CisiCp003 ribosomal protein S16
blastp_kegg lcl|sot:4099950 18 91 + 74 Gaps:1 82.95 88 76.71 2e-29 rps16 SotuCp003 ribosomal protein S16
blastp_kegg lcl|sly:3950458 18 91 + 74 Gaps:1 82.95 88 76.71 2e-29 rps16 LyesC2p087 ribosomal protein S16
blastp_pdb 3bbn_P 18 91 + 74 Gaps:1 82.95 88 75.34 3e-30 mol:protein length:88 Ribosomal Protein S16
blastp_pdb 3pyu_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3pys_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3pyq_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3pyn_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3ms0_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 3mr8_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 1voz_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 1vox_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_pdb 1vov_P 19 81 + 63 Gaps:3 79.52 83 42.42 2e-11 mol:protein length:83 30S ribosomal protein S16
blastp_uniprot_sprot sp|Q09X35|RR16_MORIN 18 91 + 74 none 83.15 89 83.78 2e-39 30S ribosomal protein S16 chloroplastic OS Morus indica GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2PMS5|RR16_SOYBN 18 91 + 74 none 83.15 89 79.73 4e-37 30S ribosomal protein S16 chloroplastic OS Glycine max GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ38|RR16_VITVI 18 91 + 74 Gaps:1 82.42 91 81.33 1e-35 30S ribosomal protein S16 chloroplastic OS Vitis vinifera GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2QDA6|RR16_CUCSA 18 86 + 69 none 81.18 85 82.61 8e-35 30S ribosomal protein S16 chloroplastic OS Cucumis sativus GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q332Z6|RR16_LACSA 18 91 + 74 Gaps:1 82.95 88 80.82 5e-34 30S ribosomal protein S16 chloroplastic OS Lactuca sativa GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2L8Y7|RR16_GOSHI 18 86 + 69 none 78.41 88 81.16 5e-34 30S ribosomal protein S16 chloroplastic OS Gossypium hirsutum GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q6EW66|RR16_NYMAL 18 86 + 69 none 80.23 86 79.71 9e-34 30S ribosomal protein S16 chloroplastic OS Nymphaea alba GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q09MJ6|RR16_CITSI 18 86 + 69 none 78.41 88 79.71 1e-33 30S ribosomal protein S16 chloroplastic OS Citrus sinensis GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q06GS8|RR16_PIPCE 18 91 + 74 none 76.29 97 74.32 1e-33 30S ribosomal protein S16 chloroplastic OS Piper cenocladum GN rps16 PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9N7|RR16_LIRTU 18 86 + 69 none 80.23 86 79.71 1e-33 30S ribosomal protein S16 chloroplastic OS Liriodendron tulipifera GN rps16 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 17 79 63 TIGR00002 none S16: ribosomal protein bS16 IPR000307
PANTHER 18 81 64 PTHR12919 none none IPR000307
Pfam 18 66 49 PF00886 none Ribosomal protein S16 IPR000307
SUPERFAMILY 18 85 68 SSF54565 none none IPR023803
PANTHER 18 81 64 PTHR12919:SF21 none none IPR026994
Gene3D 17 82 66 G3DSA:3.30.1320.10 none none IPR023803

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting