Protein : Qrob_P0069010.2 Q. robur

Protein Identifier  ? Qrob_P0069010.2 Organism . Name  Quercus robur
Score  61.1 Score Type  egn
Protein Description  (M=3) K15196 - transcription factor IIIB 90 kDa subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 315  
Kegg Orthology  K15196

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0000126 transcription factor TFIIIB complex A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIB contains the TATA-binding protein (TBP) and two Pol III-specific proteins, B'' and BRF.
GO:0006384 transcription initiation from RNA polymerase III promoter Any process involved in the assembly of the RNA polymerase III preinitiation complex (PIC) at an RNA polymerase III promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
GO:0017025 TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|obr:102706751 3 177 + 175 Gaps:5 29.57 575 64.71 1e-70 transcription factor IIIB 60 kDa subunit-like
blastp_kegg lcl|atr:s00004p00092300 2 300 + 299 Gaps:22 41.38 737 44.92 4e-66 AMTR_s00004p00092300 hypothetical protein
blastp_kegg lcl|vvi:100263800 1 163 + 163 Gaps:6 31.95 529 66.27 5e-66 transcription factor IIIB 90 kDa subunit-like
blastp_kegg lcl|obr:102705903 3 151 + 149 Gaps:3 26.12 559 68.49 7e-66 transcription factor IIIB 90 kDa subunit-like
blastp_kegg lcl|pda:103708565 3 300 + 298 Gaps:49 41.24 628 54.05 4e-65 transcription factor IIIB 90 kDa subunit
blastp_kegg lcl|dosa:Os05t0305100-01 3 151 + 149 Gaps:4 25.26 574 71.72 1e-64 Os05g0305100 Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor RNA polymerase III subunit 2) (TAF3B2). Splice isoform 2.
blastp_kegg lcl|osa:4338362 3 151 + 149 Gaps:4 25.26 574 71.72 1e-64 Os05g0305100
blastp_kegg lcl|bdi:100842802 3 151 + 149 Gaps:3 25.17 580 68.49 3e-64 transcription factor IIIB 60 kDa subunit-like
blastp_kegg lcl|mus:103987923 3 146 + 144 Gaps:1 23.03 621 71.33 8e-64 transcription factor IIIB 90 kDa subunit isoform X1
blastp_kegg lcl|bdi:100840180 3 151 + 149 Gaps:3 20.25 721 68.49 3e-63 uncharacterized LOC100840180
blastp_uniprot_sprot sp|Q8CFK2|TF3B_MOUSE 3 99 + 97 none 14.35 676 48.45 2e-22 Transcription factor IIIB 90 kDa subunit OS Mus musculus GN Brf1 PE 2 SV 1
blastp_uniprot_sprot sp|Q92994|TF3B_HUMAN 2 99 + 98 none 14.48 677 47.96 3e-22 Transcription factor IIIB 90 kDa subunit OS Homo sapiens GN BRF1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P6R0|TF3B_SCHPO 2 99 + 98 none 19.92 492 40.82 3e-14 Transcription factor IIIB 60 kDa subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN brf1 PE 1 SV 2
blastp_uniprot_sprot sp|P29056|TF3B_YEAST 1 102 + 102 none 17.11 596 35.29 1e-13 Transcription factor IIIB 70 kDa subunit OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BRF1 PE 1 SV 1
blastp_uniprot_sprot sp|P46070|TF3B_KLULA 1 89 + 89 none 16.01 556 38.20 2e-12 Transcription factor IIIB 70 kDa subunit OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN TDS4 PE 3 SV 2
blastp_uniprot_sprot sp|P43072|TF3B_CANAL 2 78 + 77 none 13.92 553 37.66 3e-11 Transcription factor IIIB 70 kDa subunit OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN TDS4 PE 3 SV 1
rpsblast_cdd gnl|CDD|31595 1 66 + 66 none 23.16 285 27.27 2e-09 COG1405 SUA7 Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB [Transcription].
rpsblast_kog gnl|CDD|36811 2 237 + 236 Gaps:15 45.87 521 29.29 8e-35 KOG1598 KOG1598 KOG1598 Transcription initiation factor TFIIIB Brf1 subunit [Transcription].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 43 43 SIGNAL_PEPTIDE none Signal peptide region none
Coils 215 236 22 Coil none none none
SUPERFAMILY 2 69 68 SSF47954 none none IPR013763
Phobius 1 26 26 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 174 281 108 PTHR11618 "Reactome:REACT_1788";signature_desc=TRANSCRIPTION INITIATION FACTOR IIB-RELATED none IPR000812
Phobius 27 38 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 1 149 149 PTHR11618:SF4 none none IPR029529
Phobius 39 43 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 2 70 69 G3DSA:1.10.472.10 none none IPR013763
Pfam 2 60 59 PF00382 "Reactome:REACT_1788" Transcription factor TFIIB repeat IPR013150
PANTHER 174 281 108 PTHR11618:SF4 none none IPR029529
Phobius 44 314 271 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 149 149 PTHR11618 "Reactome:REACT_1788";signature_desc=TRANSCRIPTION INITIATION FACTOR IIB-RELATED none IPR000812

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 64   Mitochondrion 5 0.080 0.471 NON-PLANT 64