Protein : Qrob_P0069000.2 Q. robur

Protein Identifier  ? Qrob_P0069000.2 Organism . Name  Quercus robur
Score  84.1 Score Type  egn
Protein Description  (M=3) PTHR11618:SF4 - TRANSCRIPTION FACTOR IIIB Gene Prediction Quality  validated
Protein length 

Sequence

Length: 107  

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0000126 transcription factor TFIIIB complex A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIB contains the TATA-binding protein (TBP) and two Pol III-specific proteins, B'' and BRF.
GO:0006384 transcription initiation from RNA polymerase III promoter Any process involved in the assembly of the RNA polymerase III preinitiation complex (PIC) at an RNA polymerase III promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
GO:0017025 TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263800 2 87 + 86 Gaps:19 19.85 529 60.00 3e-33 transcription factor IIIB 90 kDa subunit-like
blastp_kegg lcl|pda:103708565 2 89 + 88 Gaps:19 17.04 628 57.94 2e-32 transcription factor IIIB 90 kDa subunit
blastp_kegg lcl|mus:103987923 2 89 + 88 Gaps:19 17.23 621 58.88 6e-32 transcription factor IIIB 90 kDa subunit isoform X1
blastp_kegg lcl|smo:SELMODRAFT_421928 2 89 + 88 none 14.97 588 62.50 6e-32 hypothetical protein
blastp_kegg lcl|sot:102583078 2 97 + 96 Gaps:22 18.01 622 57.14 1e-31 transcription factor IIIB 90 kDa subunit-like
blastp_kegg lcl|sot:102590442 2 97 + 96 Gaps:22 18.21 615 55.36 4e-30 transcription factor IIIB 90 kDa subunit-like
blastp_kegg lcl|sly:101249300 2 97 + 96 Gaps:22 18.21 615 55.36 4e-30 transcription factor IIIB 90 kDa subunit-like
blastp_kegg lcl|sbi:SORBI_09g027090 2 88 + 87 Gaps:19 18.31 579 55.66 5e-30 SORBIDRAFT_09g027090 Sb09g027090 hypothetical protein
blastp_kegg lcl|zma:100274140 2 89 + 88 Gaps:19 18.45 580 55.14 5e-30 hypothetical protein
blastp_kegg lcl|bdi:100842802 2 89 + 88 Gaps:19 18.45 580 55.14 7e-30 transcription factor IIIB 60 kDa subunit-like
blastp_uniprot_sprot sp|P29056|TF3B_YEAST 17 93 + 77 Gaps:23 15.44 596 35.87 1e-10 Transcription factor IIIB 70 kDa subunit OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BRF1 PE 1 SV 1
blastp_uniprot_sprot sp|P46070|TF3B_KLULA 17 93 + 77 Gaps:23 16.55 556 36.96 2e-10 Transcription factor IIIB 70 kDa subunit OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN TDS4 PE 3 SV 2
blastp_uniprot_sprot sp|P43072|TF3B_CANAL 15 93 + 79 Gaps:23 17.00 553 35.11 1e-09 Transcription factor IIIB 70 kDa subunit OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN TDS4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9P6R0|TF3B_SCHPO 18 87 + 70 Gaps:24 17.07 492 36.90 1e-09 Transcription factor IIIB 60 kDa subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN brf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92994|TF3B_HUMAN 18 87 + 70 Gaps:24 12.41 677 41.67 8e-09 Transcription factor IIIB 90 kDa subunit OS Homo sapiens GN BRF1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8CFK2|TF3B_MOUSE 18 87 + 70 Gaps:24 12.43 676 40.48 2e-08 Transcription factor IIIB 90 kDa subunit OS Mus musculus GN Brf1 PE 2 SV 1
rpsblast_cdd gnl|CDD|31595 2 93 + 92 Gaps:26 36.49 285 32.69 5e-09 COG1405 SUA7 Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB [Transcription].
rpsblast_kog gnl|CDD|36811 16 103 + 88 Gaps:28 21.50 521 33.04 1e-16 KOG1598 KOG1598 KOG1598 Transcription initiation factor TFIIIB Brf1 subunit [Transcription].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 90 89 PTHR11618:SF4 none none IPR029529
Pfam 8 52 45 PF00382 "Reactome:REACT_1788" Transcription factor TFIIB repeat IPR013150
Gene3D 14 52 39 G3DSA:1.10.472.10 none none IPR013763
SUPERFAMILY 2 64 63 SSF47954 none none IPR013763
PANTHER 2 90 89 PTHR11618 "Reactome:REACT_1788";signature_desc=TRANSCRIPTION INITIATION FACTOR IIB-RELATED none IPR000812

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting