Protein : Qrob_P0068800.2 Q. robur
Protein Identifier  ? Qrob_P0068800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02988 - small subunit ribosomal protein S5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 312  
Kegg Orthology  K02988
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1674110 1 311 + 311 Gaps:12 100.00 309 80.26 7e-158 30S ribosomal protein S5 putative
blastp_kegg lcl|csv:101232087 59 311 + 253 Gaps:2 81.76 307 86.45 2e-155 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|csv:101203536 59 311 + 253 Gaps:2 81.76 307 86.45 2e-155 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|mdm:103446395 35 311 + 277 Gaps:4 88.35 309 82.05 6e-155 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|pxb:103933468 35 311 + 277 Gaps:4 88.35 309 81.68 6e-155 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|pxb:103944191 35 311 + 277 Gaps:4 88.35 309 82.05 8e-155 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|tcc:TCM_029839 29 311 + 283 Gaps:7 91.75 303 79.86 2e-153 Ribosomal protein S5 family protein
blastp_kegg lcl|gmx:100787105 52 311 + 260 Gaps:2 86.00 300 82.17 1e-151 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|gmx:100820232 47 311 + 265 Gaps:5 84.18 316 79.70 3e-151 30S ribosomal protein S5 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0004s04550g 7 311 + 305 Gaps:7 99.04 311 74.68 7e-151 POPTRDRAFT_1075454 hypothetical protein
blastp_pdb 3bbn_E 44 311 + 268 Gaps:7 84.74 308 75.10 3e-143 mol:protein length:308 Ribosomal Protein S5
blastp_pdb 3ohd_E 155 302 + 148 Gaps:1 91.88 160 51.70 4e-41 mol:protein length:160 30S ribosomal protein S5
blastp_pdb 3ohc_E 155 302 + 148 Gaps:1 91.88 160 51.70 4e-41 mol:protein length:160 30S ribosomal protein S5
blastp_pdb 3pyu_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_pdb 3pys_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_pdb 3pyq_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_pdb 3pyn_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_pdb 3ms0_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_pdb 3mr8_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_pdb 3fic_E 155 302 + 148 Gaps:1 97.35 151 51.70 5e-41 mol:protein length:151 30S ribosomal protein S5
blastp_uniprot_sprot sp|P93014|RR5_ARATH 42 311 + 270 Gaps:4 87.79 303 77.07 1e-143 30S ribosomal protein S5 chloroplastic OS Arabidopsis thaliana GN rps5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ST69|RR5_SPIOL 44 311 + 268 Gaps:7 84.74 308 75.10 9e-143 30S ribosomal protein S5 chloroplastic OS Spinacia oleracea GN rps5 PE 1 SV 1
blastp_uniprot_sprot sp|Q1XDJ0|RR5_PYRYE 142 310 + 169 Gaps:3 98.85 174 56.98 2e-63 30S ribosomal protein S5 chloroplastic OS Pyropia yezoensis GN rps5 PE 3 SV 1
blastp_uniprot_sprot sp|B0C1E9|RS5_ACAM1 145 310 + 166 Gaps:1 94.35 177 62.87 2e-63 30S ribosomal protein S5 OS Acaryochloris marina (strain MBIC 11017) GN rpsE PE 3 SV 1
blastp_uniprot_sprot sp|P51298|RR5_PORPU 145 310 + 166 Gaps:1 95.98 174 58.68 1e-62 30S ribosomal protein S5 chloroplastic OS Porphyra purpurea GN rps5 PE 3 SV 1
blastp_uniprot_sprot sp|B7KI03|RS5_CYAP7 145 310 + 166 Gaps:1 96.53 173 58.08 3e-62 30S ribosomal protein S5 OS Cyanothece sp. (strain PCC 7424) GN rpsE PE 3 SV 1
blastp_uniprot_sprot sp|B1WQS7|RS5_CYAA5 145 310 + 166 Gaps:1 96.53 173 58.08 5e-62 30S ribosomal protein S5 OS Cyanothece sp. (strain ATCC 51142) GN rpsE PE 3 SV 1
blastp_uniprot_sprot sp|B2ITN9|RS5_NOSP7 144 310 + 167 Gaps:1 96.00 175 58.33 2e-61 30S ribosomal protein S5 OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN rpsE PE 3 SV 1
blastp_uniprot_sprot sp|P73304|RS5_SYNY3 145 310 + 166 Gaps:1 96.53 173 59.28 2e-61 30S ribosomal protein S5 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN rpsE PE 3 SV 1
blastp_uniprot_sprot sp|B1XJJ1|RS5_SYNP2 155 310 + 156 none 90.17 173 61.54 8e-61 30S ribosomal protein S5 OS Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN rpsE PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 172 204 33 PS00585 none Ribosomal protein S5 signature. IPR018192
PANTHER 148 311 164 PTHR13718 none none IPR000851
Hamap 132 308 177 MF_01307_B none 30S ribosomal protein S5 [rpsE]. IPR005712
Phobius 15 22 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 155 219 65 PF00333 none Ribosomal protein S5, N-terminal domain IPR013810
Gene3D 222 303 82 G3DSA:3.30.230.10 none none IPR014721
Phobius 23 311 289 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 231 303 73 PF03719 none Ribosomal protein S5, C-terminal domain IPR005324
SUPERFAMILY 152 220 69 SSF54768 none none none
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
TIGRFAM 153 308 156 TIGR01021 none rpsE_bact: ribosomal protein uS5 IPR005712
ProSiteProfiles 155 218 64 PS50881 none S5 double stranded RNA-binding domain profile. IPR013810
Gene3D 153 216 64 G3DSA:3.30.160.20 none none IPR014720
SUPERFAMILY 225 303 79 SSF54211 none none IPR020568
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 22 21

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 49   Mitochondrion 2 0.054 0.770 NON-PLANT 49