3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006886 | intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
| GO:0016021 | integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| GO:0005783 | endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). |
10 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pxb:103943064 | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 88.46 | 2e-81 | uncharacterized LOC103943064 |
| blastp_kegg | lcl|pmum:103321430 | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 89.23 | 4e-81 | uncharacterized LOC103321430 |
| blastp_kegg | lcl|vvi:100252692 | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 90.00 | 5e-81 | uncharacterized LOC100252692 |
| blastp_kegg | lcl|pper:PRUPE_ppa013297mg | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 89.23 | 6e-81 | hypothetical protein |
| blastp_kegg | lcl|csv:101231117 | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 87.69 | 6e-81 | uncharacterized LOC101231117 |
| blastp_kegg | lcl|pop:POPTR_0010s11830g | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 89.23 | 7e-81 | POPTRDRAFT_726821 hypothetical protein |
| blastp_kegg | lcl|eus:EUTSA_v10015011mg | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 87.69 | 5e-80 | hypothetical protein |
| blastp_kegg | lcl|aly:ARALYDRAFT_488581 | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 86.92 | 7e-80 | hypothetical protein |
| blastp_kegg | lcl|rcu:RCOM_0597570 | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 86.92 | 7e-80 | hypothetical protein |
| blastp_kegg | lcl|pvu:PHAVU_002G319800g | 1 | 131 | + | 131 | Gaps:1 | 100.00 | 130 | 88.46 | 8e-80 | hypothetical protein |
11 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 6 | 24 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 45 | 63 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 25 | 44 | 20 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Coils | 110 | 131 | 22 | Coil | none | none | none |
| PANTHER | 2 | 129 | 128 | PTHR12701 | none | none | IPR008417 |
| Pfam | 1 | 129 | 129 | PF05529 | none | B-cell receptor-associated protein 31-like | none |
| Phobius | 64 | 93 | 30 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 94 | 114 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 115 | 131 | 17 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| PANTHER | 2 | 129 | 128 | PTHR12701:SF12 | none | none | none |
| Phobius | 1 | 5 | 5 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
