Protein : Qrob_P0067130.2 Q. robur
Protein Identifier  ? Qrob_P0067130.2 Organism . Name  Quercus robur
Score  78.1 Score Type  egn
Protein Description  (M=4) PTHR10013 - GENERAL VESICULAR TRANSPORT FACTOR P115 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 870  
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0048280 vesicle fusion with Golgi apparatus The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO:0048193 Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266995 1 869 + 869 Gaps:48 100.00 915 81.75 0.0 golgin candidate 6-like
blastp_kegg lcl|pop:POPTR_0001s35520g 1 869 + 869 Gaps:46 100.00 915 78.69 0.0 POPTRDRAFT_797875 vesicle tethering family protein
blastp_kegg lcl|pmum:103329782 1 869 + 869 Gaps:54 100.00 913 79.96 0.0 golgin candidate 6
blastp_kegg lcl|tcc:TCM_016988 1 861 + 861 Gaps:51 99.01 911 78.27 0.0 Golgin candidate 6 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa001083mg 1 869 + 869 Gaps:54 100.00 913 79.19 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014189mg 1 861 + 861 Gaps:50 99.12 913 77.57 0.0 hypothetical protein
blastp_kegg lcl|mdm:103432024 1 869 + 869 Gaps:57 100.00 908 79.63 0.0 golgin candidate 6-like
blastp_kegg lcl|cit:102612836 1 861 + 861 Gaps:50 98.80 916 77.68 0.0 golgin candidate 6-like
blastp_kegg lcl|pxb:103960975 1 869 + 869 Gaps:57 100.00 908 79.41 0.0 golgin candidate 6-like
blastp_kegg lcl|fve:101308892 1 869 + 869 Gaps:52 100.00 911 78.49 0.0 golgin candidate 6-like
blastp_pdb 3grl_A 14 641 + 628 Gaps:130 95.55 651 30.39 2e-51 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_B 14 641 + 628 Gaps:130 95.55 651 30.39 2e-51 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_A 14 641 + 628 Gaps:130 95.55 651 30.39 2e-51 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 2w3c_A 62 641 + 580 Gaps:125 99.65 577 30.43 2e-45 mol:protein length:577 GENERAL VESICULAR TRANSPORT FACTOR P115
blastp_uniprot_sprot sp|B0F9L4|GOGC6_ARATH 1 856 + 856 Gaps:51 98.80 914 67.11 0.0 Golgin candidate 6 OS Arabidopsis thaliana GN GC6 PE 1 SV 2
blastp_uniprot_sprot sp|O60763|USO1_HUMAN 14 791 + 778 Gaps:165 82.43 962 28.37 1e-55 General vesicular transport factor p115 OS Homo sapiens GN USO1 PE 1 SV 2
blastp_uniprot_sprot sp|P41542|USO1_RAT 14 791 + 778 Gaps:159 82.69 959 28.75 7e-55 General vesicular transport factor p115 OS Rattus norvegicus GN Uso1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Z1Z0|USO1_MOUSE 14 791 + 778 Gaps:155 82.69 959 28.50 2e-54 General vesicular transport factor p115 OS Mus musculus GN Uso1 PE 1 SV 2
blastp_uniprot_sprot sp|P41541|USO1_BOVIN 14 749 + 736 Gaps:152 78.25 961 28.06 4e-53 General vesicular transport factor p115 OS Bos taurus GN USO1 PE 1 SV 1
blastp_uniprot_sprot sp|Q09857|USO1_SCHPO 25 537 + 513 Gaps:92 50.33 1067 26.26 2e-26 Intracellular protein transport protein uso1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN uso1 PE 3 SV 3
blastp_uniprot_sprot sp|P25386|USO1_YEAST 25 232 + 208 Gaps:30 12.96 1790 33.19 8e-25 Intracellular protein transport protein USO1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN USO1 PE 1 SV 2
rpsblast_cdd gnl|CDD|147171 745 867 + 123 Gaps:13 100.00 136 45.59 3e-22 pfam04871 Uso1_p115_C Uso1 / p115 like vesicle tethering protein C terminal region. Also known as General vesicular transport factor Transcytosis associate protein (TAP) and Vesicle docking protein this myosin-shaped molecule consists of an N-terminal globular head region a coiled-coil tail which mediates dimerisation and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi) via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of the acidic C-terminus which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region and GM130 with another.
rpsblast_cdd gnl|CDD|191116 327 641 + 315 Gaps:68 89.29 308 29.82 1e-13 pfam04869 Uso1_p115_head Uso1 / p115 like vesicle tethering protein head region. Also known as General vesicular transport factor Transcytosis associated protein (TAP) and Vesicle docking protein this myosin-shaped molecule consists of an N-terminal globular head region a coiled-coil tail which mediates dimerisation and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi) via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of part of the head region. The head region is highly conserved but its function is unknown. It does not seem to be essential for vesicle tethering. The N-terminal part of the head region not within this family contains context-detected Armadillo/beta-catenin-like repeats (pfam00514).
rpsblast_kog gnl|CDD|36164 23 868 + 846 Gaps:147 85.05 970 27.76 6e-66 KOG0946 KOG0946 KOG0946 ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking secretion and vesicular transport].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 28 226 199 SSF48371 none none IPR016024
SUPERFAMILY 466 539 74 SSF48371 none none IPR016024
SUPERFAMILY 292 429 138 SSF48371 none none IPR016024
Pfam 321 641 321 PF04869 none Uso1 / p115 like vesicle tethering protein, head region IPR006953
Pfam 745 867 123 PF04871 none Uso1 / p115 like vesicle tethering protein, C terminal region IPR006955
Coils 723 751 29 Coil none none none
PANTHER 616 854 239 PTHR10013 none none IPR024095
PANTHER 3 593 591 PTHR10013 none none IPR024095
Gene3D 386 447 62 G3DSA:1.25.10.10 none none IPR011989
Gene3D 20 314 295 G3DSA:1.25.10.10 none none IPR011989
Coils 758 786 29 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting