Protein : Qrob_P0064140.2 Q. robur
Protein Identifier  ? Qrob_P0064140.2 Organism . Name  Quercus robur
Score  21.0 Score Type  egn
Protein Description  (M=1) K06675 - structural maintenance of chromosome 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1216  
Kegg Orthology  K06675
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0051276 chromosome organization A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_018557 28 1215 + 1188 Gaps:38 93.65 1245 83.79 0.0 Structural maintenance of chromosome 3 isoform 1
blastp_kegg lcl|pop:POPTR_0017s11950g 28 1215 + 1188 Gaps:44 93.31 1256 83.87 0.0 POPTRDRAFT_577636 hypothetical protein
blastp_kegg lcl|mdm:103405722 28 1215 + 1188 Gaps:38 93.65 1245 83.79 0.0 structural maintenance of chromosomes protein 4
blastp_kegg lcl|rcu:RCOM_0100760 28 1215 + 1188 Gaps:52 93.73 1259 82.71 0.0 Structural maintenance of chromosome putative
blastp_kegg lcl|pmum:103330007 28 1215 + 1188 Gaps:38 93.65 1245 83.10 0.0 structural maintenance of chromosomes protein 4
blastp_kegg lcl|pper:PRUPE_ppa000362mg 28 1215 + 1188 Gaps:38 93.65 1245 83.02 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10010934mg 28 1215 + 1188 Gaps:38 94.11 1239 82.08 0.0 hypothetical protein
blastp_kegg lcl|cit:102612383 28 1215 + 1188 Gaps:38 93.96 1241 82.16 0.0 structural maintenance of chromosomes protein 4-like
blastp_kegg lcl|gmx:100781330 28 1215 + 1188 Gaps:38 93.88 1242 81.73 0.0 structural maintenance of chromosomes protein 4-like
blastp_kegg lcl|gmx:100778712 28 1214 + 1187 Gaps:38 93.80 1242 83.00 0.0 structural maintenance of chromosomes protein 4-like
blastp_pdb 3l51_B 489 648 + 160 Gaps:2 95.18 166 57.59 3e-53 mol:protein length:166 Structural maintenance of chromosomes protein
blastp_pdb 1w1w_D 1012 1209 + 198 Gaps:26 49.30 430 37.74 3e-32 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_C 1012 1209 + 198 Gaps:26 49.30 430 37.74 3e-32 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_B 1012 1209 + 198 Gaps:26 49.30 430 37.74 3e-32 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1w1w_A 1012 1209 + 198 Gaps:26 49.30 430 37.74 3e-32 mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1
blastp_pdb 1xew_Y 1061 1204 + 144 none 83.72 172 41.67 2e-31 mol:protein length:172 SMC protein
blastp_pdb 3kta_D 1061 1204 + 144 none 83.24 173 41.67 2e-31 mol:protein length:173 Chromosome segregation protein smc
blastp_pdb 3kta_B 1061 1204 + 144 none 83.24 173 41.67 2e-31 mol:protein length:173 Chromosome segregation protein smc
blastp_pdb 1xex_B 1061 1204 + 144 none 83.72 172 40.97 6e-31 mol:protein length:172 SMC protein
blastp_pdb 1e69_F 1077 1203 + 127 Gaps:1 39.75 322 33.59 9e-15 mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN
blastp_uniprot_sprot sp|Q9FJL0|SMC4_ARATH 28 1214 + 1187 Gaps:41 93.63 1241 76.59 0.0 Structural maintenance of chromosomes protein 4 OS Arabidopsis thaliana GN SMC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q54LV0|SMC4_DICDI 28 1209 + 1182 Gaps:75 82.76 1415 41.33 0.0 Structural maintenance of chromosomes protein 4 OS Dictyostelium discoideum GN smc4 PE 3 SV 1
blastp_uniprot_sprot sp|P50532|SMC4_XENLA 20 1210 + 1191 Gaps:91 89.77 1290 41.11 0.0 Structural maintenance of chromosomes protein 4 OS Xenopus laevis GN smc4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8CG47|SMC4_MOUSE 20 1209 + 1190 Gaps:85 89.97 1286 41.92 0.0 Structural maintenance of chromosomes protein 4 OS Mus musculus GN Smc4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ERA5|SMC4_MICAR 20 1209 + 1190 Gaps:97 93.08 1243 41.92 0.0 Structural maintenance of chromosomes protein 4 (Fragment) OS Microtus arvalis GN SMC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NTJ3|SMC4_HUMAN 20 1209 + 1190 Gaps:93 89.83 1288 42.01 0.0 Structural maintenance of chromosomes protein 4 OS Homo sapiens GN SMC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q12267|SMC4_YEAST 18 1203 + 1186 Gaps:107 85.40 1418 37.82 0.0 Structural maintenance of chromosomes protein 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC4 PE 1 SV 1
blastp_uniprot_sprot sp|P41004|SMC4_SCHPO 28 1204 + 1177 Gaps:129 86.10 1324 38.07 0.0 Structural maintenance of chromosomes protein 4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cut3 PE 1 SV 2
blastp_uniprot_sprot sp|Q20060|SMC4_CAEEL 20 1214 + 1195 Gaps:138 79.99 1549 30.35 1e-113 Structural maintenance of chromosomes protein 4 OS Caenorhabditis elegans GN smc-4 PE 1 SV 1
blastp_uniprot_sprot sp|P48996|DPY27_CAEEL 28 1205 + 1178 Gaps:165 81.08 1469 29.72 1e-97 Chromosome condensation protein dpy-27 OS Caenorhabditis elegans GN dpy-27 PE 1 SV 1

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 423 993 571 PTHR18937 none none none
PANTHER 28 398 371 PTHR18937:SF171 none none none
Pfam 26 1199 1174 PF02463 none RecF/RecN/SMC N terminal domain IPR003395
Coils 1027 1058 32 Coil none none none
Coils 829 864 36 Coil none none none
SUPERFAMILY 470 664 195 SSF75553 none none IPR010935
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 1023 1205 183 SSF52540 none none IPR027417
SUPERFAMILY 864 904 41 SSF52540 none none IPR027417
Gene3D 802 803 2 G3DSA:3.40.50.300 none none IPR027417
Gene3D 19 145 127 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1072 1205 134 G3DSA:3.40.50.300 none none IPR027417
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
SMART 505 621 117 SM00968 none SMC proteins Flexible Hinge Domain IPR010935
PANTHER 1024 1215 192 PTHR18937:SF171 none none none
PANTHER 1024 1215 192 PTHR18937 none none none
Coils 219 377 159 Coil none none none
PANTHER 423 993 571 PTHR18937:SF171 none none none
Coils 180 204 25 Coil none none none
PIRSF 25 1214 1190 PIRSF005719 none none IPR024704
Coils 744 793 50 Coil none none none
Coils 152 173 22 Coil none none none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Coils 871 948 78 Coil none none none
Coils 699 741 43 Coil none none none
Pfam 505 621 117 PF06470 none SMC proteins Flexible Hinge Domain IPR010935
SUPERFAMILY 275 387 113 SSF90257 none none none
Phobius 20 1215 1196 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 28 398 371 PTHR18937 none none none

1 Localization

Analysis Start End Length
TMHMM 5 27 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 1 0.952 0.017 NON-PLANT 19