Protein : Qrob_P0063960.2 Q. robur
Protein Identifier  ? Qrob_P0063960.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) PTHR10799:SF558 - SNF2-RELATED DOMAIN-CONTAINING PROTEIN (PTHR10799:SF558) Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 896  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
GO:0004003 ATP-dependent DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa025772mg 1 884 + 884 Gaps:43 98.62 871 78.46 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331525 1 884 + 884 Gaps:40 97.72 876 77.92 0.0 chromodomain-helicase-DNA-binding protein 1-like
blastp_kegg lcl|vvi:100247895 1 884 + 884 Gaps:40 97.72 876 76.87 0.0 chromodomain-helicase-DNA-binding protein 1-like
blastp_kegg lcl|pxb:103964213 1 884 + 884 Gaps:46 98.39 868 77.17 0.0 chromodomain-helicase-DNA-binding protein 1-like
blastp_kegg lcl|mdm:103438968 1 884 + 884 Gaps:44 97.71 872 77.93 0.0 chromodomain-helicase-DNA-binding protein 1-like
blastp_kegg lcl|tcc:TCM_046992 1 884 + 884 Gaps:47 97.92 867 79.39 0.0 SNF2 domain-containing protein / helicase domain-containing protein
blastp_kegg lcl|fve:101299139 2 884 + 883 Gaps:41 98.27 869 75.53 0.0 chromodomain-helicase-DNA-binding protein 1-like
blastp_kegg lcl|rcu:RCOM_1609320 1 884 + 884 Gaps:49 98.49 860 73.67 0.0 helicase putative (EC:2.7.11.1)
blastp_kegg lcl|cic:CICLE_v10018815mg 1 884 + 884 Gaps:32 97.71 872 74.06 0.0 hypothetical protein
blastp_kegg lcl|cit:102613193 1 884 + 884 Gaps:38 97.72 878 73.66 0.0 chromodomain-helicase-DNA-binding protein 1-like
blastp_pdb 3mwy_W 37 599 + 563 Gaps:88 64.38 800 38.25 2e-89 mol:protein length:800 Chromo domain-containing protein 1
blastp_pdb 1z6a_A 31 535 + 505 Gaps:95 85.60 500 35.28 2e-54 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 31 535 + 505 Gaps:95 85.60 500 35.28 2e-54 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 31 535 + 505 Gaps:95 85.60 500 35.28 2e-54 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z3i_X 33 553 + 521 Gaps:90 77.80 644 29.94 1e-40 mol:protein length:644 similar to RAD54-like
blastp_pdb 1z5z_B 346 535 + 190 Gaps:23 63.10 271 30.99 5e-16 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 1z5z_A 346 535 + 190 Gaps:23 63.10 271 30.99 5e-16 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_uniprot_sprot sp|Q86WJ1|CHD1L_HUMAN 27 884 + 858 Gaps:137 91.97 897 41.45 1e-149 Chromodomain-helicase-DNA-binding protein 1-like OS Homo sapiens GN CHD1L PE 1 SV 2
blastp_uniprot_sprot sp|Q9CXF7|CHD1L_MOUSE 27 884 + 858 Gaps:182 92.89 900 40.43 4e-148 Chromodomain-helicase-DNA-binding protein 1-like OS Mus musculus GN Chd1l PE 2 SV 1
blastp_uniprot_sprot sp|Q3B7N1|CHD1L_BOVIN 16 884 + 869 Gaps:159 92.98 897 40.77 2e-147 Chromodomain-helicase-DNA-binding protein 1-like OS Bos taurus GN CHD1L PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZU90|CHD1L_DANRE 27 884 + 858 Gaps:153 80.80 1026 39.57 1e-142 Chromodomain-helicase-DNA-binding protein 1-like OS Danio rerio GN chd1l PE 2 SV 1
blastp_uniprot_sprot sp|Q08773|ISW2_YEAST 27 615 + 589 Gaps:85 46.61 1120 41.57 4e-104 ISWI chromatin-remodeling complex ATPase ISW2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN ISW2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5A310|ISW2_CANAL 26 619 + 594 Gaps:85 50.66 1056 40.37 2e-103 ISWI chromatin-remodeling complex ATPase ISW2 OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN ISW2 PE 2 SV 1
blastp_uniprot_sprot sp|Q91ZW3|SMCA5_MOUSE 14 550 + 537 Gaps:84 45.58 1051 43.63 2e-101 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS Mus musculus GN Smarca5 PE 1 SV 1
blastp_uniprot_sprot sp|O60264|SMCA5_HUMAN 14 550 + 537 Gaps:84 45.53 1052 43.42 2e-101 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS Homo sapiens GN SMARCA5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6PGB8|SMCA1_MOUSE 28 550 + 523 Gaps:79 44.17 1046 43.94 2e-101 Probable global transcription activator SNF2L1 OS Mus musculus GN Smarca1 PE 1 SV 1
blastp_uniprot_sprot sp|P28370|SMCA1_HUMAN 28 550 + 523 Gaps:73 44.97 1054 43.04 7e-101 Probable global transcription activator SNF2L1 OS Homo sapiens GN SMARCA1 PE 1 SV 2
rpsblast_cdd gnl|CDD|178687 33 545 + 513 Gaps:77 43.56 1033 44.44 1e-102 PLN03142 PLN03142 Probable chromatin-remodeling complex ATPase chain Provisional.
rpsblast_cdd gnl|CDD|30899 23 557 + 535 Gaps:75 60.74 866 32.13 4e-67 COG0553 HepA Superfamily II DNA/RNA helicases SNF2 family [Transcription / DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|201060 40 371 + 332 Gaps:63 100.00 301 40.86 1e-55 pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g. SNF2 STH1 brahma MOT1) DNA repair (e.g. ERCC6 RAD16 RAD5) DNA recombination (e.g. RAD54) and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar ETL1).

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 394 558 165 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SUPERFAMILY 381 558 178 SSF52540 none none IPR027417
SUPERFAMILY 164 224 61 SSF52540 none none IPR027417
PANTHER 322 884 563 PTHR10799:SF558 none none IPR031053
SUPERFAMILY 732 886 155 SSF52949 none none none
SMART 420 515 96 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 425 515 91 PF00271 none Helicase conserved C-terminal domain IPR001650
PANTHER 25 290 266 PTHR10799:SF558 none none IPR031053
Gene3D 379 545 167 G3DSA:3.40.50.300 none none IPR027417
PANTHER 25 290 266 PTHR10799 none none none
PANTHER 322 884 563 PTHR10799 none none none
ProSiteProfiles 60 221 162 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SMART 33 229 197 SM00487 none DEAD-like helicases superfamily IPR014001
SUPERFAMILY 31 266 236 SSF52540 none none IPR027417
Pfam 40 285 246 PF00176 none SNF2 family N-terminal domain IPR000330
Gene3D 36 218 183 G3DSA:3.40.50.300 none none IPR027417

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting