4 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003677 | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| GO:0000786 | nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. |
| GO:0006334 | nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. |
18 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|tcc:TCM_029078 | 1 | 230 | + | 230 | Gaps:22 | 79.27 | 275 | 63.30 | 4e-69 | Homeodomain-like/winged-helix DNA-binding family protein putative |
| blastp_kegg | lcl|rcu:RCOM_1047670 | 1 | 219 | + | 219 | Gaps:18 | 77.39 | 283 | 65.75 | 1e-68 | DNA binding protein putative |
| blastp_kegg | lcl|pop:POPTR_0018s07040g | 1 | 219 | + | 219 | Gaps:22 | 77.06 | 279 | 61.86 | 9e-68 | DNA-binding family protein |
| blastp_kegg | lcl|vvi:100254369 | 1 | 219 | + | 219 | Gaps:6 | 77.22 | 281 | 68.20 | 9e-66 | uncharacterized LOC100254369 |
| blastp_kegg | lcl|pop:POPTR_0006s14940g | 1 | 219 | + | 219 | Gaps:18 | 76.73 | 275 | 61.61 | 2e-65 | POPTRDRAFT_561043 DNA-binding family protein |
| blastp_kegg | lcl|mus:103980957 | 1 | 220 | + | 220 | Gaps:13 | 77.17 | 276 | 57.75 | 6e-65 | single myb histone 4 |
| blastp_kegg | lcl|pvu:PHAVU_010G136100g | 1 | 230 | + | 230 | Gaps:16 | 80.28 | 289 | 51.72 | 2e-62 | hypothetical protein |
| blastp_kegg | lcl|pvu:PHAVU_010G136000g | 1 | 230 | + | 230 | Gaps:20 | 80.55 | 293 | 52.12 | 2e-61 | hypothetical protein |
| blastp_kegg | lcl|mdm:103450610 | 24 | 223 | + | 200 | Gaps:6 | 57.82 | 339 | 57.14 | 4e-61 | single myb histone 4-like |
| blastp_kegg | lcl|cic:CICLE_v10009173mg | 1 | 219 | + | 219 | Gaps:13 | 76.47 | 272 | 65.87 | 4e-61 | hypothetical protein |
| blastp_uniprot_sprot | sp|F4IEY4|TRB5_ARATH | 1 | 219 | + | 219 | Gaps:16 | 77.70 | 287 | 41.26 | 8e-35 | Telomere repeat-binding factor 5 OS Arabidopsis thaliana GN At1g72740 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|F4I7L1|TRB4_ARATH | 1 | 226 | + | 226 | Gaps:15 | 80.74 | 296 | 40.17 | 5e-31 | Telomere repeat-binding factor 4 OS Arabidopsis thaliana GN At1g17520 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|Q8VWK4|TRB1_ARATH | 1 | 150 | + | 150 | Gaps:25 | 53.67 | 300 | 32.92 | 1e-11 | Telomere repeat-binding factor 1 OS Arabidopsis thaliana GN TRB1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P23444|H1_MAIZE | 67 | 129 | + | 63 | Gaps:2 | 26.42 | 246 | 43.08 | 9e-11 | Histone H1 OS Zea mays PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P27806|H1_WHEAT | 66 | 129 | + | 64 | Gaps:2 | 27.73 | 238 | 43.94 | 1e-10 | Histone H1 OS Triticum aestivum PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P26569|H12_ARATH | 66 | 140 | + | 75 | Gaps:1 | 27.84 | 273 | 40.79 | 1e-09 | Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P40267|H1_SOLPN | 30 | 129 | + | 100 | Gaps:11 | 52.97 | 202 | 32.71 | 1e-07 | Histone H1 OS Solanum pennellii PE 2 SV 1 |
| rpsblast_cdd | gnl|CDD|197772 | 61 | 125 | + | 65 | Gaps:1 | 100.00 | 66 | 40.91 | 8e-12 | smart00526 H15 Domain in histone families 1 and 5. |
7 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | 61 | 140 | 80 | SSF46785 | none | none | none |
| Pfam | 65 | 128 | 64 | PF00538 | none | linker histone H1 and H5 family | IPR005818 |
| ProSiteProfiles | 63 | 131 | 69 | PS51504 | none | Linker histone H1/H5 globular (H15) domain profile. | IPR005818 |
| PANTHER | 67 | 219 | 153 | PTHR11467 | none | none | none |
| Gene3D | 64 | 136 | 73 | G3DSA:1.10.10.10 | none | none | IPR011991 |
| SMART | 61 | 126 | 66 | SM00526 | none | Domain in histone families 1 and 5 | IPR005818 |
| PANTHER | 67 | 219 | 153 | PTHR11467:SF27 | none | none | none |
9 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
| Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
| Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
| Bourran_2000_2002_QTL2_Delta.F | Qrob_Chr02 | 2 | s_1CSO13_1244 | s_1AVEUF_1540 | 55.44 | 46,71 | 63,68 | lod | 7.3232 | 0.058 |
| Bourran2_2002_QTL9_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1BFNDA_375 | s_1A3VA1_2139 | 32,5 | 17 | 62 | lod | 3,1 | 4,2 |
| Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf | Qrob_Chr02 | 2 | s_1AEP21_172 | v_6048_204 | 46.33 | 22,5 | 65,23 | lod | 4.972 | 0.03 |
