Protein : Qrob_P0062670.2 Q. robur
Protein Identifier  ? Qrob_P0062670.2 Organism . Name  Quercus robur
Score  93.2 Score Type  egn
Protein Description  (M=1) PTHR13047:SF1 - PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT Gene Prediction Quality  validated
Protein length 

Sequence

Length: 257  
Kegg Orthology  K14397
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003729 mRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0005849 mRNA cleavage factor complex Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
GO:0006378 mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_037594 17 203 + 187 none 85.39 219 80.21 8e-104 CFIM-25 isoform 1
blastp_kegg lcl|cit:102626492 1 202 + 202 Gaps:6 91.59 214 76.53 2e-102 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|cic:CICLE_v10009459mg 1 202 + 202 Gaps:6 100.00 196 77.04 2e-102 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1046330 1 203 + 203 Gaps:8 92.06 214 75.63 1e-99 pre-mRNA cleavage factor im 25kD subunit putative
blastp_kegg lcl|csv:101225515 1 203 + 203 Gaps:9 92.17 217 73.50 6e-98 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|csv:101206856 1 203 + 203 Gaps:9 92.17 217 73.50 6e-98 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|gmx:100791216 14 203 + 190 Gaps:3 86.57 216 74.33 4e-97 cleavage and polyadenylation specificity factor subunit 5-like
blastp_kegg lcl|pop:POPTR_0006s14840g 2 203 + 202 Gaps:5 77.13 258 71.36 1e-95 POPTRDRAFT_819254 hypothetical protein
blastp_kegg lcl|ath:AT4G29820 1 203 + 203 Gaps:2 92.34 222 65.85 3e-95 CFIM-25 CFIM-25-like protein
blastp_kegg lcl|cmo:103498651 1 202 + 202 Gaps:1 91.78 219 69.15 8e-95 cleavage and polyadenylation specificity factor subunit 5
blastp_pdb 3n9u_B 13 195 + 183 Gaps:6 81.30 230 41.71 4e-45 mol:protein length:230 Cleavage and polyadenylation specificity fact
blastp_pdb 3n9u_A 13 195 + 183 Gaps:6 81.30 230 41.71 4e-45 mol:protein length:230 Cleavage and polyadenylation specificity fact
blastp_pdb 2cl3_A 13 195 + 183 Gaps:6 81.30 230 41.71 4e-45 mol:protein length:230 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 3bho_A 26 195 + 170 Gaps:1 81.25 208 43.20 5e-45 mol:protein length:208 Cleavage and polyadenylation specificity fact
blastp_pdb 2j8q_B 26 195 + 170 Gaps:1 74.45 227 43.20 5e-45 mol:protein length:227 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 2j8q_A 26 195 + 170 Gaps:1 74.45 227 43.20 5e-45 mol:protein length:227 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT
blastp_pdb 3q2t_B 26 195 + 170 Gaps:1 81.64 207 43.20 5e-45 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3q2t_A 26 195 + 170 Gaps:1 81.64 207 43.20 5e-45 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3q2s_B 26 195 + 170 Gaps:1 81.64 207 43.20 5e-45 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_pdb 3q2s_A 26 195 + 170 Gaps:1 81.64 207 43.20 5e-45 mol:protein length:207 Cleavage and polyadenylation specificity fact
blastp_uniprot_sprot sp|Q7T3C6|CPSF5_DANRE 26 195 + 170 Gaps:1 74.12 228 43.20 6e-45 Cleavage and polyadenylation specificity factor subunit 5 OS Danio rerio GN cpsf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DJE4|CPSF5_XENLA 26 195 + 170 Gaps:1 74.45 227 43.20 6e-45 Cleavage and polyadenylation specificity factor subunit 5 OS Xenopus laevis GN cpsf5 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KM65|CPSF5_RAT 26 195 + 170 Gaps:1 74.45 227 43.20 4e-44 Cleavage and polyadenylation specificity factor subunit 5 OS Rattus norvegicus GN Nudt21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQF3|CPSF5_MOUSE 26 195 + 170 Gaps:1 74.45 227 43.20 4e-44 Cleavage and polyadenylation specificity factor subunit 5 OS Mus musculus GN Nudt21 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RAI8|CPSF5_PONAB 26 195 + 170 Gaps:1 74.45 227 43.20 4e-44 Cleavage and polyadenylation specificity factor subunit 5 OS Pongo abelii GN NUDT21 PE 2 SV 1
blastp_uniprot_sprot sp|O43809|CPSF5_HUMAN 26 195 + 170 Gaps:1 74.45 227 43.20 4e-44 Cleavage and polyadenylation specificity factor subunit 5 OS Homo sapiens GN NUDT21 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZCA2|CPSF5_BOVIN 26 195 + 170 Gaps:1 74.45 227 43.20 4e-44 Cleavage and polyadenylation specificity factor subunit 5 OS Bos taurus GN NUDT21 PE 2 SV 1
blastp_uniprot_sprot sp|Q55E68|CPSF5_DICDI 48 203 + 156 Gaps:2 78.00 200 44.23 1e-41 Cleavage and polyadenylation specificity factor subunit 5 OS Dictyostelium discoideum GN cpsf5 PE 3 SV 1
rpsblast_cdd gnl|CDD|206040 26 202 + 177 Gaps:1 93.62 188 57.39 5e-75 pfam13869 NUDIX_2 Nucleotide hydrolase. Nudix hydrolases are found in all classes of organism and hydrolyse a wide range of organic pyrophosphates including nucleoside di- and triphosphates di-nucleoside and diphospho-inositol polyphosphates nucleotide sugars and RNA caps with varying degrees of substrate specificity.
rpsblast_kog gnl|CDD|36902 19 214 + 196 Gaps:5 86.43 221 51.31 3e-63 KOG1689 KOG1689 KOG1689 mRNA cleavage factor I subunit [RNA processing and modification].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 22 202 181 PTHR13047:SF1 none none none
Phobius 1 217 217 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 245 256 12 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 22 202 181 PTHR13047 none none IPR016706
Pfam 26 200 175 PF13869 none Nucleotide hydrolase IPR016706
Phobius 218 244 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 64 115 52 SSF55811 none none IPR015797

1 Localization

Analysis Start End Length
TMHMM 223 245 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting