Protein : Qrob_P0060660.2 Q. robur
Protein Identifier  ? Qrob_P0060660.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K15287 - solute carrier family 35, member F1/2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 236  
Kegg Orthology  K15287
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103322448 1 225 + 225 none 60.32 373 85.33 3e-138 solute carrier family 35 member F1-like
blastp_kegg lcl|pper:PRUPE_ppa007405mg 1 225 + 225 none 60.98 369 84.00 3e-136 hypothetical protein
blastp_kegg lcl|mdm:103427950 1 227 + 227 none 60.53 375 82.38 1e-133 solute carrier family 35 member F1-like
blastp_kegg lcl|pxb:103929909 1 227 + 227 none 61.02 372 82.38 2e-133 solute carrier family 35 member F1-like
blastp_kegg lcl|pxb:103953641 1 227 + 227 none 60.53 375 82.38 3e-133 solute carrier family 35 member F1-like
blastp_kegg lcl|gmx:100817482 1 223 + 223 none 64.45 346 82.96 1e-132 solute carrier family 35 member F1-like
blastp_kegg lcl|gmx:100780052 1 227 + 227 none 69.00 329 81.94 5e-132 solute carrier family 35 member F1-like
blastp_kegg lcl|pvu:PHAVU_007G002600g 1 223 + 223 none 67.58 330 83.41 5e-132 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_008G002800g 1 223 + 223 none 64.64 345 82.96 1e-131 hypothetical protein
blastp_kegg lcl|gmx:100805326 6 223 + 218 none 63.56 343 83.49 9e-131 solute carrier family 35 member F1-like
blastp_uniprot_sprot sp|Q5T1Q4|S35F1_HUMAN 5 222 + 218 Gaps:8 55.39 408 45.13 2e-58 Solute carrier family 35 member F1 OS Homo sapiens GN SLC35F1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8BGK5|S35F1_MOUSE 5 222 + 218 Gaps:8 55.39 408 45.58 5e-58 Solute carrier family 35 member F1 OS Mus musculus GN Slc35f1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8IXU6|S35F2_HUMAN 6 222 + 217 Gaps:8 60.16 374 46.67 2e-57 Solute carrier family 35 member F2 OS Homo sapiens GN SLC35F2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7TML3|S35F2_MOUSE 5 222 + 218 Gaps:8 60.27 375 45.58 2e-55 Solute carrier family 35 member F2 OS Mus musculus GN Slc35f2 PE 2 SV 2
blastp_uniprot_sprot sp|Q0V9U2|S35F2_XENTR 5 222 + 218 Gaps:12 58.82 391 40.87 8e-52 Solute carrier family 35 member F2 OS Xenopus tropicalis GN slc35f2 PE 2 SV 2
blastp_uniprot_sprot sp|O59785|YCN8_SCHPO 5 223 + 219 Gaps:12 43.37 505 42.92 2e-42 Uncharacterized solute carrier family 35 member C320.08 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC320.08 PE 1 SV 1
rpsblast_cdd gnl|CDD|191432 9 223 + 215 Gaps:7 66.07 336 61.26 1e-85 pfam06027 DUF914 Eukaryotic protein of unknown function (DUF914). This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins.
rpsblast_kog gnl|CDD|37977 9 223 + 215 Gaps:1 63.69 336 75.70 2e-86 KOG2766 KOG2766 KOG2766 Predicted membrane protein [Function unknown].
rpsblast_kog gnl|CDD|37976 87 201 + 115 Gaps:1 27.88 416 27.59 3e-09 KOG2765 KOG2765 KOG2765 Predicted membrane protein [Function unknown].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 4 223 220 PTHR14233:SF4 none none none
Pfam 4 224 221 PF06027 none Eukaryotic protein of unknown function (DUF914) IPR009262
Phobius 1 33 33 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 153 192 40 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 49 65 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 98 102 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 13 25 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 134 152 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 123 133 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 34 48 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 26 33 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 64 149 86 SSF103481 none none none
Phobius 74 97 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 122 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 66 73 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 193 212 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 4 223 220 PTHR14233 none none none
Phobius 213 235 23 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 12 12 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

6 Localization

Analysis Start End Length
TMHMM 131 150 19
TMHMM 47 65 18
TMHMM 74 96 22
TMHMM 193 212 19
TMHMM 100 122 22
TMHMM 13 32 19

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 36   Secretory pathway 1 0.916 0.029 NON-PLANT 36