Protein : Qrob_P0059770.2 Q. robur
Protein Identifier  ? Qrob_P0059770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) 1.1.1.95 - Phosphoglycerate dehydrogenase. Code Enzyme  EC:1.1.1.95
Gene Prediction Quality  validated Protein length 

Sequence

Length: 604  
Kegg Orthology  K00058
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016597 amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0051287 NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO:0004617 phosphoglycerate dehydrogenase activity Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
GO:0006564 L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259056 1 603 + 603 Gaps:10 100.00 605 81.65 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0002s12420g 1 603 + 603 Gaps:17 100.00 598 80.94 0.0 POPTRDRAFT_1071977 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s02290g 1 603 + 603 Gaps:18 100.00 597 81.07 0.0 hypothetical protein
blastp_kegg lcl|cmo:103496183 37 603 + 567 Gaps:4 95.33 599 82.49 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic
blastp_kegg lcl|cit:102621273 30 603 + 574 Gaps:5 96.64 595 83.13 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10000651mg 41 603 + 563 Gaps:3 95.13 595 83.22 0.0 hypothetical protein
blastp_kegg lcl|csv:101221689 39 603 + 565 Gaps:4 94.99 599 82.43 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0009s09950g 16 603 + 588 none 98.49 597 80.10 0.0 POPTRDRAFT_201872 D-3-phosphoglycerate dehydrogenase family protein
blastp_kegg lcl|vvi:100260655 58 603 + 546 none 91.76 595 85.16 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0811570 19 603 + 585 Gaps:2 98.49 596 79.90 0.0 d-3-phosphoglycerate dehydrogenase putative (EC:1.1.1.95)
blastp_pdb 2g76_B 89 366 + 278 Gaps:2 82.39 335 50.36 2e-87 mol:protein length:335 D-3-phosphoglycerate dehydrogenase
blastp_pdb 2g76_A 89 366 + 278 Gaps:2 82.39 335 50.36 2e-87 mol:protein length:335 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3ddn_B 60 580 + 521 Gaps:38 95.27 528 39.56 5e-84 mol:protein length:528 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3ddn_A 60 580 + 521 Gaps:38 95.27 528 39.56 5e-84 mol:protein length:528 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3dc2_B 60 580 + 521 Gaps:38 95.09 529 39.56 6e-84 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3dc2_A 60 580 + 521 Gaps:38 95.09 529 39.56 6e-84 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1ygy_B 60 580 + 521 Gaps:38 95.09 529 39.56 6e-84 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1ygy_A 60 580 + 521 Gaps:38 95.09 529 39.56 6e-84 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1wwk_B 64 365 + 302 Gaps:4 98.37 307 42.05 4e-69 mol:protein length:307 phosphoglycerate dehydrogenase
blastp_pdb 1wwk_A 64 365 + 302 Gaps:4 98.37 307 42.05 4e-69 mol:protein length:307 phosphoglycerate dehydrogenase
blastp_uniprot_sprot sp|O04130|SERA_ARATH 61 603 + 543 none 87.02 624 74.95 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic OS Arabidopsis thaliana GN At1g17745 PE 1 SV 2
blastp_uniprot_sprot sp|Q58424|SERA_METJA 64 603 + 540 Gaps:31 99.43 524 42.61 4e-129 D-3-phosphoglycerate dehydrogenase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|O27051|SERA_METTH 60 603 + 544 Gaps:20 99.81 525 40.08 4e-122 D-3-phosphoglycerate dehydrogenase OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|P73821|SERA_SYNY3 46 603 + 558 Gaps:33 97.29 554 40.45 2e-117 D-3-phosphoglycerate dehydrogenase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|O29445|SERA_ARCFU 64 595 + 532 Gaps:23 98.10 527 40.81 1e-115 D-3-phosphoglycerate dehydrogenase OS Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|P35136|SERA_BACSU 64 603 + 540 Gaps:29 99.24 525 40.12 1e-115 D-3-phosphoglycerate dehydrogenase OS Bacillus subtilis (strain 168) GN serA PE 3 SV 3
blastp_uniprot_sprot sp|Q60HD7|SERA_MACFA 89 464 + 376 Gaps:7 69.61 533 45.01 5e-93 D-3-phosphoglycerate dehydrogenase OS Macaca fascicularis GN PHGDH PE 2 SV 4
blastp_uniprot_sprot sp|O08651|SERA_RAT 89 464 + 376 Gaps:5 69.61 533 45.01 7e-93 D-3-phosphoglycerate dehydrogenase OS Rattus norvegicus GN Phgdh PE 1 SV 3
blastp_uniprot_sprot sp|A5A6P1|SERA_PANTR 89 464 + 376 Gaps:7 69.61 533 44.74 2e-92 D-3-phosphoglycerate dehydrogenase OS Pan troglodytes GN PHGDH PE 2 SV 1
blastp_uniprot_sprot sp|O43175|SERA_HUMAN 89 464 + 376 Gaps:7 69.61 533 44.74 2e-92 D-3-phosphoglycerate dehydrogenase OS Homo sapiens GN PHGDH PE 1 SV 4

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 33 429 397 PTHR10996 none none none
Gene3D 60 165 106 G3DSA:3.40.50.720 none none IPR016040
ProSitePatterns 203 230 28 PS00065 none D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. IPR029752
Pfam 533 589 57 PF01842 none ACT domain IPR002912
PANTHER 33 429 397 PTHR10996:SF110 none none none
ProSiteProfiles 531 603 73 PS51671 none ACT domain profile. IPR002912
Pfam 64 373 310 PF00389 none D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR006139
Gene3D 166 343 178 G3DSA:3.40.50.720 none none IPR016040
Gene3D 524 599 76 G3DSA:3.30.70.260 none none none
Gene3D 378 523 146 G3DSA:3.30.1330.90 none none IPR029009
SUPERFAMILY 379 525 147 SSF143548 none none IPR029009
SUPERFAMILY 61 194 134 SSF52283 none none none
SUPERFAMILY 160 342 183 SSF51735 none none none
ProSitePatterns 280 296 17 PS00671 none D-isomer specific 2-hydroxyacid dehydrogenases signature 3. IPR029753
SUPERFAMILY 521 601 81 SSF55021 none none none
Pfam 166 341 176 PF02826 none D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IPR006140
TIGRFAM 64 603 540 TIGR01327 "KEGG:00260+1.1.1.95","KEGG:00680+1.1.1.95","UniPathway:UPA00135" PGDH: phosphoglycerate dehydrogenase IPR006236

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting