Protein : Qrob_P0058010.2 Q. robur
Protein Identifier  ? Qrob_P0058010.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) 1.1.1.95 - Phosphoglycerate dehydrogenase. Code Enzyme  EC:1.1.1.95
Gene Prediction Quality  validated Protein length 

Sequence

Length: 649  
Kegg Orthology  K00058
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016597 amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0051287 NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO:0004617 phosphoglycerate dehydrogenase activity Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
GO:0006564 L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s01000g 3 648 + 646 Gaps:28 99.84 637 80.50 0.0 POPTRDRAFT_1084113 hypothetical protein
blastp_kegg lcl|tcc:TCM_027097 23 648 + 626 Gaps:36 95.99 648 80.23 0.0 D-3-phosphoglycerate dehydrogenase
blastp_kegg lcl|pop:POPTR_0010s25600g 3 648 + 646 Gaps:36 99.84 633 79.43 0.0 POPTRDRAFT_1092826 hypothetical protein
blastp_kegg lcl|cit:102626787 33 648 + 616 Gaps:33 95.09 632 80.37 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|fve:101310343 28 648 + 621 Gaps:31 95.43 635 80.86 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|pxb:103931738 13 648 + 636 Gaps:33 97.16 633 80.00 0.0 D-3-phosphoglycerate dehydrogenase 2 chloroplastic-like
blastp_kegg lcl|cam:101506228 1 648 + 648 Gaps:34 100.00 630 79.52 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_008G256300g 1 648 + 648 Gaps:34 100.00 626 79.87 0.0 hypothetical protein
blastp_kegg lcl|mdm:103405207 3 648 + 646 Gaps:34 99.84 633 78.80 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|mtr:MTR_4g005880 1 648 + 648 Gaps:40 100.00 630 79.21 0.0 Phosphoglycerate dehydrogenase
blastp_pdb 2g76_B 97 400 + 304 Gaps:21 85.07 335 48.77 1e-81 mol:protein length:335 D-3-phosphoglycerate dehydrogenase
blastp_pdb 2g76_A 97 400 + 304 Gaps:21 85.07 335 48.77 1e-81 mol:protein length:335 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3ddn_B 95 627 + 533 Gaps:51 95.45 528 38.89 1e-73 mol:protein length:528 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3ddn_A 95 627 + 533 Gaps:51 95.45 528 38.89 1e-73 mol:protein length:528 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3dc2_B 95 602 + 508 Gaps:50 90.36 529 40.17 1e-73 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3dc2_A 95 602 + 508 Gaps:50 90.36 529 40.17 1e-73 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1ygy_B 95 602 + 508 Gaps:50 90.36 529 40.17 1e-73 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1ygy_A 95 602 + 508 Gaps:50 90.36 529 40.17 1e-73 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1wwk_B 92 410 + 319 Gaps:28 100.00 307 42.35 4e-65 mol:protein length:307 phosphoglycerate dehydrogenase
blastp_pdb 1wwk_A 92 410 + 319 Gaps:28 100.00 307 42.35 4e-65 mol:protein length:307 phosphoglycerate dehydrogenase
blastp_uniprot_sprot sp|O04130|SERA_ARATH 61 648 + 588 Gaps:24 92.31 624 80.03 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic OS Arabidopsis thaliana GN At1g17745 PE 1 SV 2
blastp_uniprot_sprot sp|Q58424|SERA_METJA 97 648 + 552 Gaps:55 99.43 524 42.80 2e-123 D-3-phosphoglycerate dehydrogenase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|O27051|SERA_METTH 92 648 + 557 Gaps:44 100.00 525 38.86 5e-111 D-3-phosphoglycerate dehydrogenase OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|O29445|SERA_ARCFU 97 648 + 552 Gaps:53 99.62 527 40.57 7e-111 D-3-phosphoglycerate dehydrogenase OS Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|P73821|SERA_SYNY3 92 648 + 557 Gaps:45 95.31 554 40.53 9e-111 D-3-phosphoglycerate dehydrogenase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|P35136|SERA_BACSU 97 640 + 544 Gaps:49 97.71 525 40.16 3e-108 D-3-phosphoglycerate dehydrogenase OS Bacillus subtilis (strain 168) GN serA PE 3 SV 3
blastp_uniprot_sprot sp|O08651|SERA_RAT 97 509 + 413 Gaps:30 74.48 533 43.58 4e-87 D-3-phosphoglycerate dehydrogenase OS Rattus norvegicus GN Phgdh PE 1 SV 3
blastp_uniprot_sprot sp|Q60HD7|SERA_MACFA 97 509 + 413 Gaps:30 74.48 533 42.82 2e-86 D-3-phosphoglycerate dehydrogenase OS Macaca fascicularis GN PHGDH PE 2 SV 4
blastp_uniprot_sprot sp|A5A6P1|SERA_PANTR 97 509 + 413 Gaps:30 74.48 533 42.57 3e-86 D-3-phosphoglycerate dehydrogenase OS Pan troglodytes GN PHGDH PE 2 SV 1
blastp_uniprot_sprot sp|Q61753|SERA_MOUSE 97 509 + 413 Gaps:30 74.48 533 42.82 3e-86 D-3-phosphoglycerate dehydrogenase OS Mus musculus GN Phgdh PE 1 SV 3

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 93 198 106 G3DSA:3.40.50.720 none none IPR016040
SUPERFAMILY 94 227 134 SSF52283 none none none
SUPERFAMILY 566 644 79 SSF55021 none none none
ProSitePatterns 284 306 23 PS00670 none D-isomer specific 2-hydroxyacid dehydrogenases signature 2. IPR029753
SUPERFAMILY 193 393 201 SSF51735 none none none
ProSitePatterns 236 263 28 PS00065 none D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. IPR029752
Pfam 580 637 58 PF01842 none ACT domain IPR002912
SUPERFAMILY 424 570 147 SSF143548 none none IPR029009
Gene3D 423 568 146 G3DSA:3.30.1330.90 none none IPR029009
Gene3D 199 394 196 G3DSA:3.40.50.720 none none IPR016040
PANTHER 362 474 113 PTHR10996 none none none
ProSitePatterns 313 329 17 PS00671 none D-isomer specific 2-hydroxyacid dehydrogenases signature 3. IPR029753
ProSiteProfiles 576 648 73 PS51671 none ACT domain profile. IPR002912
Pfam 97 400 304 PF00389 none D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR006139
Pfam 362 392 31 PF02826 none D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IPR006140
Pfam 199 346 148 PF02826 none D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IPR006140
PANTHER 64 343 280 PTHR10996 none none none
SMART 224 361 138 SM00997 "KEGG:00270+3.3.1.1","MetaCyc:PWY-5041","UniPathway:UPA00314" S-adenosyl-L-homocysteine hydrolase, NAD binding domain IPR015878
PANTHER 64 343 280 PTHR10996:SF110 none none none
PANTHER 362 474 113 PTHR10996:SF110 none none none
Gene3D 569 643 75 G3DSA:3.30.70.260 none none none
TIGRFAM 97 647 551 TIGR01327 "KEGG:00260+1.1.1.95","KEGG:00680+1.1.1.95","UniPathway:UPA00135" PGDH: phosphoglycerate dehydrogenase IPR006236

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 22 21

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 69   Mitochondrion 4 0.038 0.633 NON-PLANT 69