Protein : Qrob_P0057460.2 Q. robur
Protein Identifier  ? Qrob_P0057460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K17428 - large subunit ribosomal protein L47 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 107  
Kegg Orthology  K17428
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0005761 mitochondrial ribosome A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100500208 1 106 + 106 Gaps:2 76.06 142 79.63 2e-53 uncharacterized LOC100500208
blastp_kegg lcl|vvi:100248410 1 106 + 106 none 75.71 140 78.30 5e-51 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|pvu:PHAVU_009G188900g 1 106 + 106 Gaps:2 76.06 142 77.78 6e-51 hypothetical protein
blastp_kegg lcl|fve:101296382 1 106 + 106 Gaps:1 75.00 140 73.33 1e-50 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|atr:s00045p00206320 1 106 + 106 Gaps:1 75.54 139 79.05 1e-50 AMTR_s00045p00206320 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s10670g 1 106 + 106 Gaps:2 76.06 142 75.00 2e-50 POPTRDRAFT_731548 ribosomal protein L29
blastp_kegg lcl|gmx:100812176 1 106 + 106 Gaps:3 76.22 143 78.90 4e-50 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|csv:101226177 1 106 + 106 Gaps:3 76.22 143 78.90 4e-50 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|csv:101210906 1 106 + 106 Gaps:3 76.22 143 78.90 4e-50 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|mdm:103428294 3 106 + 104 none 73.76 141 75.96 1e-49 39S ribosomal protein L47 mitochondrial-like
blastp_uniprot_sprot sp|Q08DT6|RM47_BOVIN 27 106 + 80 Gaps:1 31.35 252 49.37 1e-15 39S ribosomal protein L47 mitochondrial OS Bos taurus GN MRPL47 PE 2 SV 1
blastp_uniprot_sprot sp|Q8K2Y7|RM47_MOUSE 27 106 + 80 Gaps:1 31.35 252 49.37 1e-15 39S ribosomal protein L47 mitochondrial OS Mus musculus GN Mrpl47 PE 2 SV 2
blastp_uniprot_sprot sp|Q9HD33|RM47_HUMAN 27 106 + 80 Gaps:1 31.60 250 48.10 8e-15 39S ribosomal protein L47 mitochondrial OS Homo sapiens GN MRPL47 PE 1 SV 2
blastp_uniprot_sprot sp|P87232|RM04_SCHPO 32 98 + 67 Gaps:1 47.22 144 41.18 2e-09 54S ribosomal protein L4 mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mrpl4 PE 3 SV 1
blastp_uniprot_sprot sp|Q2H080|RM04_CHAGB 34 101 + 68 Gaps:2 25.74 272 41.43 4e-09 54S ribosomal protein L4 mitochondrial OS Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN MRPL4 PE 3 SV 1
blastp_uniprot_sprot sp|A1C6F8|RM04_ASPCL 34 90 + 57 Gaps:5 28.57 217 46.77 4e-08 54S ribosomal protein L4 mitochondrial OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN mrpl4 PE 3 SV 1
blastp_uniprot_sprot sp|P36517|RM04_YEAST 32 90 + 59 Gaps:3 19.44 319 43.55 5e-08 54S ribosomal protein L4 mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MRPL4 PE 1 SV 2
blastp_uniprot_sprot sp|A7A1V9|RM04_YEAS7 32 90 + 59 Gaps:3 19.44 319 43.55 5e-08 54S ribosomal protein L4 mitochondrial OS Saccharomyces cerevisiae (strain YJM789) GN MRPL4 PE 3 SV 1
blastp_uniprot_sprot sp|A1DH31|RM04_NEOFI 34 90 + 57 Gaps:5 28.57 217 46.77 6e-08 54S ribosomal protein L4 mitochondrial OS Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN mrpl4 PE 3 SV 1
blastp_uniprot_sprot sp|Q5B0N3|RM04_EMENI 28 85 + 58 Gaps:2 27.40 219 46.67 8e-08 54S ribosomal protein L4 mitochondrial OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN mrpl4 PE 3 SV 1
rpsblast_cdd gnl|CDD|148544 34 106 + 73 none 83.91 87 50.68 1e-21 pfam06984 MRP-L47 Mitochondrial 39-S ribosomal protein L47 (MRP-L47). This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins in that they fulfil similar functions in protein biosynthesis. However they are distinct in number features and primary structure.
rpsblast_kog gnl|CDD|38541 1 106 + 106 Gaps:10 54.46 213 40.52 2e-25 KOG3331 KOG3331 KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation ribosomal structure and biogenesis].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 34 106 73 PF06984 none Mitochondrial 39-S ribosomal protein L47 (MRP-L47) IPR010729
PANTHER 25 106 82 PTHR21183 none none IPR010729
PANTHER 25 106 82 PTHR21183:SF18 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 14   Mitochondrion 3 0.056 0.740 NON-PLANT 14