Protein : Qrob_P0055920.2 Q. robur
Protein Identifier  ? Qrob_P0055920.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR21717:SF15 - TELOMERE REPEAT-BINDING FACTOR 1 (PTHR21717:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 322  
Kegg Orthology  K09422
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335082 1 297 + 297 none 99.00 300 80.13 6e-139 telomere repeat-binding factor 1
blastp_kegg lcl|cit:102629981 1 298 + 298 Gaps:6 99.67 303 78.15 7e-134 telomere repeat-binding factor 1-like
blastp_kegg lcl|cic:CICLE_v10028926mg 1 298 + 298 Gaps:6 99.67 303 77.81 9e-134 hypothetical protein
blastp_kegg lcl|tcc:TCM_007242 1 297 + 297 Gaps:2 99.00 300 80.13 8e-132 Telomere repeat binding factor 1 isoform 1
blastp_kegg lcl|fve:101308235 1 296 + 296 Gaps:2 89.91 327 76.53 3e-131 telomere repeat-binding factor 1-like
blastp_kegg lcl|vvi:100261713 1 295 + 295 none 98.33 300 77.29 3e-129 uncharacterized LOC100261713
blastp_kegg lcl|rcu:RCOM_0835000 1 312 + 312 Gaps:3 91.20 341 75.24 6e-127 DNA binding protein putative
blastp_kegg lcl|pop:POPTR_0001s30000g 1 297 + 297 Gaps:4 96.07 305 75.09 1e-124 POPTRDRAFT_798081 DNA-binding family protein
blastp_kegg lcl|pxb:103964453 1 292 + 292 Gaps:45 93.27 342 66.77 3e-123 telomere repeat-binding factor 1-like
blastp_kegg lcl|pop:POPTR_0009s09020g 1 298 + 298 Gaps:3 99.66 296 76.27 7e-123 POPTRDRAFT_557527 DNA-binding family protein
blastp_pdb 1vf9_A 5 56 + 52 Gaps:4 75.00 64 52.08 8e-06 mol:protein length:64 Telomeric repeat binding factor 2
blastp_pdb 1vfc_A 5 56 + 52 Gaps:4 76.19 63 52.08 9e-06 mol:protein length:63 Telomeric repeat binding factor 2
blastp_pdb 1w0u_B 5 56 + 52 Gaps:4 87.27 55 52.08 9e-06 mol:protein length:55 TELOMERIC REPEAT BINDING FACTOR 2
blastp_pdb 1w0u_A 5 56 + 52 Gaps:4 87.27 55 52.08 9e-06 mol:protein length:55 TELOMERIC REPEAT BINDING FACTOR 2
blastp_uniprot_sprot sp|Q8VWK4|TRB1_ARATH 1 297 + 297 Gaps:12 99.00 300 69.02 4e-106 Telomere repeat-binding factor 1 OS Arabidopsis thaliana GN TRB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FJW5|TRB2_ARATH 1 294 + 294 Gaps:6 99.67 299 54.36 2e-68 Telomere repeat-binding factor 2 OS Arabidopsis thaliana GN TRB2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M2X3|TRB3_ARATH 1 291 + 291 Gaps:4 97.97 295 50.52 7e-56 Telomere repeat-binding factor 3 OS Arabidopsis thaliana GN TRB3 PE 1 SV 1
blastp_uniprot_sprot sp|F4IEY4|TRB5_ARATH 1 268 + 268 Gaps:17 88.85 287 38.82 8e-35 Telomere repeat-binding factor 5 OS Arabidopsis thaliana GN At1g72740 PE 2 SV 1
blastp_uniprot_sprot sp|F4I7L1|TRB4_ARATH 1 180 + 180 Gaps:28 62.84 296 43.55 2e-29 Telomere repeat-binding factor 4 OS Arabidopsis thaliana GN At1g17520 PE 2 SV 2
blastp_uniprot_sprot sp|P23444|H1_MAIZE 127 187 + 61 Gaps:2 25.61 246 46.03 5e-09 Histone H1 OS Zea mays PE 2 SV 2
blastp_uniprot_sprot sp|P27806|H1_WHEAT 127 191 + 65 Gaps:2 28.15 238 41.79 1e-06 Histone H1 OS Triticum aestivum PE 2 SV 2
blastp_uniprot_sprot sp|P26569|H12_ARATH 125 186 + 62 Gaps:1 23.08 273 42.86 2e-06 Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1
rpsblast_cdd gnl|CDD|197772 118 181 + 64 Gaps:1 98.48 66 43.08 1e-11 smart00526 H15 Domain in histone families 1 and 5.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 2 70 69 SSF46689 none none IPR009057
Pfam 5 55 51 PF00249 none Myb-like DNA-binding domain IPR001005
SMART 4 59 56 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
SUPERFAMILY 117 197 81 SSF46785 none none none
SMART 118 183 66 SM00526 none Domain in histone families 1 and 5 IPR005818
PANTHER 1 105 105 PTHR21717:SF15 none none none
PANTHER 1 105 105 PTHR21717 none none none
ProSiteProfiles 120 188 69 PS51504 none Linker histone H1/H5 globular (H15) domain profile. IPR005818
ProSiteProfiles 1 58 58 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
Gene3D 4 56 53 G3DSA:1.10.10.60 none none IPR009057
Coils 243 281 39 Coil none none none
Gene3D 119 189 71 G3DSA:1.10.10.10 none none IPR011991
Pfam 126 181 56 PF00538 none linker histone H1 and H5 family IPR005818

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting