Protein : Qrob_P0055440.2 Q. robur
Protein Identifier  ? Qrob_P0055440.2 Organism . Name  Quercus robur
Protein Description  (M=1) K14649 - transcription initiation factor TFIID subunit 8 Alias (in v1)  Qrob_P0491700.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 387  
Kegg Orthology  K14649
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246447 1 386 + 386 Gaps:11 100.00 377 65.78 3e-163 uncharacterized LOC100246447
blastp_kegg lcl|pper:PRUPE_ppa007206mg 1 386 + 386 Gaps:12 100.00 378 64.02 1e-157 hypothetical protein
blastp_kegg lcl|pxb:103941948 1 386 + 386 Gaps:13 100.00 377 63.13 1e-155 transcription initiation factor TFIID subunit 8-like
blastp_kegg lcl|pmum:103330121 1 386 + 386 Gaps:12 100.00 378 64.02 6e-151 transcription initiation factor TFIID subunit 8
blastp_kegg lcl|fve:101292232 1 386 + 386 Gaps:15 100.00 379 61.74 8e-149 uncharacterized protein LOC101292232
blastp_kegg lcl|mdm:103404632 1 386 + 386 Gaps:13 100.00 377 61.80 9e-149 transcription initiation factor TFIID subunit 8
blastp_kegg lcl|mdm:103421526 1 386 + 386 Gaps:13 100.00 377 62.07 1e-144 transcription initiation factor TFIID subunit 8-like
blastp_kegg lcl|pop:POPTR_0004s11520g 4 386 + 383 Gaps:12 96.19 394 59.63 5e-144 POPTRDRAFT_556379 hypothetical protein
blastp_kegg lcl|pxb:103955715 1 386 + 386 Gaps:13 100.00 377 62.07 2e-143 transcription initiation factor TFIID subunit 8-like
blastp_kegg lcl|cmo:103498533 1 386 + 386 Gaps:11 100.00 377 58.62 2e-143 transcription initiation factor TFIID subunit 8
blastp_uniprot_sprot sp|Q9SYZ9|TAF8_ARATH 25 386 + 362 Gaps:39 93.20 353 42.86 2e-60 Transcription initiation factor TFIID subunit 8 OS Arabidopsis thaliana GN TAF8 PE 1 SV 1
blastp_uniprot_sprot sp|Q9EQH4|TAF8_MOUSE 28 206 + 179 Gaps:24 50.97 308 31.21 2e-14 Transcription initiation factor TFIID subunit 8 OS Mus musculus GN Taf8 PE 2 SV 1
blastp_uniprot_sprot sp|Q5VWG9|TAF3_HUMAN 24 169 + 146 Gaps:23 13.89 929 35.66 3e-14 Transcription initiation factor TFIID subunit 3 OS Homo sapiens GN TAF3 PE 1 SV 1
blastp_uniprot_sprot sp|Q7Z7C8|TAF8_HUMAN 28 206 + 179 Gaps:24 50.65 310 31.21 3e-14 Transcription initiation factor TFIID subunit 8 OS Homo sapiens GN TAF8 PE 1 SV 1
blastp_uniprot_sprot sp|A7MAZ4|TAF8_BOVIN 28 206 + 179 Gaps:24 50.65 310 31.21 3e-14 Transcription initiation factor TFIID subunit 8 OS Bos taurus GN TAF8 PE 2 SV 1
blastp_uniprot_sprot sp|Q5F489|TAF3_CHICK 24 169 + 146 Gaps:23 13.87 930 35.66 8e-14 Transcription initiation factor TFIID subunit 3 OS Gallus gallus GN TAF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5HZG4|TAF3_MOUSE 24 169 + 146 Gaps:23 13.84 932 34.88 1e-13 Transcription initiation factor TFIID subunit 3 OS Mus musculus GN Taf3 PE 1 SV 2
blastp_uniprot_sprot sp|Q7ZYA2|TAF8_XENLA 28 206 + 179 Gaps:24 53.58 293 29.94 9e-13 Transcription initiation factor TFIID subunit 8 OS Xenopus laevis GN taf8 PE 2 SV 1
blastp_uniprot_sprot sp|Q28J24|TAF8_XENTR 28 206 + 179 Gaps:26 53.58 293 29.94 5e-12 Transcription initiation factor TFIID subunit 8 OS Xenopus tropicalis GN taf8 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P0T2|TAF8_DANRE 28 206 + 179 Gaps:24 50.97 308 26.75 3e-09 Transcription initiation factor TFIID subunit 8 OS Danio rerio GN taf8 PE 1 SV 1
rpsblast_cdd gnl|CDD|128846 24 96 + 73 none 94.81 77 56.16 5e-23 smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors.
rpsblast_cdd gnl|CDD|203666 24 96 + 73 none 94.81 77 43.84 2e-20 pfam07524 Bromo_TP Bromodomain associated. This domain is predicted to bind DNA and is often found associated with pfam00439 and in transcription factors. It has a histone-like fold.
rpsblast_cdd gnl|CDD|176263 160 211 + 52 none 96.30 54 46.15 6e-10 cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA TFIIB TFIID TFIIE TFIIF and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions such as serving as activator-binding sites involvement in the core-promoter recognition or a role in the essential catalytic activity of the complex. The mouse ortholog of TAF8 is called taube nuss protein (TBN) and is required for early embryonic development. TBN mutant mice exhibit disturbances in the balance between cell death and cell survival in the early embryo. TAF8 plays a role in the differentiation of preadipocyte fibroblasts to adipocytes it is also required for the integration of TAF10 into the TAF complex. In yeast and human cells TAFs have been found as components of other complexes besides TFIID. TAF8 is also a component of a small TAF complex (SMAT) which contains TAF8 TAF10 and SUPT7L. Several TAFs interact via histone-fold motifs. The histone fold (HFD) is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. TAF8 contains an H4 related histone fold motif and interacts with several subunits of TFIID including TBP and the histone-fold protein TAF10. Currently five HF-containing TAF pairs have been described or suggested to exist in TFIID: TAF6-TAF9 TAF4-TAF12 TAF11-TAF13 TAF8-TAF10 and TAF3-TAF10.
rpsblast_kog gnl|CDD|37600 1 379 + 379 Gaps:37 98.02 353 28.03 1e-46 KOG2389 KOG2389 KOG2389 Predicted bromodomain transcription factor [Transcription].
rpsblast_kog gnl|CDD|39537 35 210 + 176 Gaps:25 50.46 323 28.22 2e-15 KOG4336 KOG4336 KOG4336 TBP-associated transcription factor Prodos [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 24 96 73 PF07524 none Bromodomain associated IPR006565
PANTHER 5 209 205 PTHR23307 none none none
PANTHER 5 209 205 PTHR23307:SF0 none none none
Pfam 160 209 50 PF10406 none Transcription factor TFIID complex subunit 8 C-term IPR019473
Gene3D 35 87 53 G3DSA:1.10.20.10 none none IPR009072
SUPERFAMILY 34 97 64 SSF47113 none none IPR009072
SMART 24 100 77 SM00576 none Bromodomain transcription factors and PHD domain containing proteins IPR006565

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting