Protein : Qrob_P0055370.2 Q. robur
Protein Identifier  ? Qrob_P0055370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) 3.6.3.43 - Peptide-transporting ATPase. Code Enzyme  EC:3.6.3.43
Gene Prediction Quality  validated Protein length 

Sequence

Length: 608  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_046755 1 607 + 607 Gaps:37 100.00 644 82.76 0.0 Transporter associated with antigen processing protein 2
blastp_kegg lcl|rcu:RCOM_0048860 1 607 + 607 Gaps:37 100.00 644 83.39 0.0 Multidrug resistance protein putative (EC:3.6.3.44)
blastp_kegg lcl|pop:POPTR_0017s13110g 1 607 + 607 Gaps:38 100.00 645 81.86 0.0 POPTRDRAFT_259430 hypothetical protein
blastp_kegg lcl|pda:103698270 14 606 + 593 Gaps:45 97.65 637 79.26 0.0 ABC transporter B family member 25
blastp_kegg lcl|tcc:TCM_014301 18 607 + 590 Gaps:38 99.37 630 77.80 0.0 Transporter associated with antigen processing protein 2 isoform 1
blastp_kegg lcl|vvi:100248338 18 607 + 590 Gaps:38 99.21 631 78.27 0.0 ABC transporter B family member 25-like
blastp_kegg lcl|atr:s00047p00228170 17 607 + 591 Gaps:37 98.59 637 78.03 0.0 AMTR_s00047p00228170 hypothetical protein
blastp_kegg lcl|cit:102608041 1 607 + 607 Gaps:38 100.00 643 75.89 0.0 ABC transporter B family member 25-like
blastp_kegg lcl|cam:101508803 20 607 + 588 Gaps:38 99.05 632 75.08 0.0 ABC transporter B family member 25-like
blastp_kegg lcl|vvi:100259965 15 605 + 591 Gaps:38 99.68 631 75.36 0.0 ABC transporter B family member 25-like
blastp_pdb 2yl4_A 54 599 + 546 Gaps:9 91.60 595 45.32 8e-154 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 54 599 + 546 Gaps:9 88.05 619 45.14 2e-152 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3g61_B 86 607 + 522 Gaps:26 79.44 1284 39.41 1e-106 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 86 607 + 522 Gaps:26 79.44 1284 39.41 1e-106 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 86 607 + 522 Gaps:26 79.44 1284 39.41 1e-106 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 86 607 + 522 Gaps:26 79.44 1284 39.41 1e-106 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_B 86 607 + 522 Gaps:26 79.44 1284 39.41 2e-106 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 86 607 + 522 Gaps:26 79.44 1284 39.41 2e-106 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 4a82_D 88 599 + 512 Gaps:6 88.24 578 37.65 9e-103 mol:protein length:578 CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REG
blastp_pdb 4a82_C 88 599 + 512 Gaps:6 88.24 578 37.65 9e-103 mol:protein length:578 CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REG
blastp_uniprot_sprot sp|Q9FNU2|AB25B_ORYSJ 54 606 + 553 none 86.27 641 83.00 0.0 ABC transporter B family member 25 OS Oryza sativa subsp. japonica GN OsABCB25 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WML0|AB27B_ARATH 1 601 + 601 Gaps:41 98.76 644 75.16 0.0 ABC transporter B family member 27 OS Arabidopsis thaliana GN ABCB27 PE 1 SV 1
blastp_uniprot_sprot sp|Q54BU4|ABCB1_DICDI 54 600 + 547 Gaps:13 59.19 909 48.14 3e-167 ABC transporter B family member 1 OS Dictyostelium discoideum GN abcB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9JI39|ABCBA_MOUSE 54 599 + 546 Gaps:17 76.22 715 46.24 8e-151 ATP-binding cassette sub-family B member 10 mitochondrial OS Mus musculus GN Abcb10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NRK6|ABCBA_HUMAN 54 599 + 546 Gaps:9 73.85 738 45.32 2e-150 ATP-binding cassette sub-family B member 10 mitochondrial OS Homo sapiens GN ABCB10 PE 1 SV 2
blastp_uniprot_sprot sp|Q54W24|ABCB4_DICDI 54 596 + 543 Gaps:13 69.10 767 43.21 2e-133 ABC transporter B family member 4 OS Dictyostelium discoideum GN abcB4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9NP78|ABCB9_HUMAN 49 600 + 552 Gaps:18 70.76 766 41.14 3e-133 ATP-binding cassette sub-family B member 9 OS Homo sapiens GN ABCB9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JJ59|ABCB9_MOUSE 49 600 + 552 Gaps:18 71.13 762 40.96 9e-133 ATP-binding cassette sub-family B member 9 OS Mus musculus GN Abcb9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QYJ4|ABCB9_RAT 49 600 + 552 Gaps:10 71.13 762 40.04 1e-132 ATP-binding cassette sub-family B member 9 OS Rattus norvegicus GN Abcb9 PE 1 SV 1
blastp_uniprot_sprot sp|Q56A55|ABCB8_DANRE 54 599 + 546 Gaps:15 76.33 714 41.83 3e-126 ATP-binding cassette sub-family B member 8 mitochondrial OS Danio rerio GN abcb8 PE 2 SV 1

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 54 340 287 G3DSA:1.20.1560.10 none none none
Phobius 293 303 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 325 607 283 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 85 107 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 54 341 288 SSF90123 none none IPR011527
Gene3D 361 593 233 G3DSA:3.40.50.300 none none IPR027417
PANTHER 54 606 553 PTHR24221:SF127 none none none
PIRSF 48 606 559 PIRSF002773 none none none
Phobius 264 292 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 501 515 15 PS00211 none ABC transporters family signature. IPR017871
Pfam 379 529 151 PF00005 none ABC transporter IPR003439
ProSiteProfiles 361 598 238 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
SMART 388 582 195 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Pfam 70 313 244 PF00664 none ABC transporter transmembrane region IPR011527
Phobius 200 263 64 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 353 599 247 SSF52540 none none IPR027417
Phobius 108 169 62 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 170 199 30 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 304 324 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 54 327 274 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 1 84 84 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 54 606 553 PTHR24221 none none none

4 Localization

Analysis Start End Length
TMHMM 177 199 22
TMHMM 301 323 22
TMHMM 264 286 22
TMHMM 84 106 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting