Protein : Qrob_P0053000.2 Q. robur
Protein Identifier  ? Qrob_P0053000.2 Organism . Name  Quercus robur
Score  90.0 Score Type  egn
Protein Description  (M=2) K08741 - DNA mismatch repair protein MSH5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 289  
Kegg Orthology  K08741
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252044 1 275 + 275 Gaps:28 37.55 807 80.53 8e-168 mutS protein homolog 5-like
blastp_kegg lcl|tcc:TCM_030844 2 275 + 274 Gaps:41 38.51 818 75.87 2e-163 MUTS
blastp_kegg lcl|cit:102623332 2 273 + 272 Gaps:27 36.87 811 77.93 4e-161 DNA mismatch repair protein MSH5-like
blastp_kegg lcl|pmum:103326497 9 275 + 267 Gaps:28 36.37 811 77.97 6e-157 DNA mismatch repair protein MSH5
blastp_kegg lcl|fve:101304081 1 275 + 275 Gaps:28 37.45 809 74.26 6e-156 DNA mismatch repair protein MSH5-like
blastp_kegg lcl|cic:CICLE_v10010304mg 11 273 + 263 Gaps:27 36.30 799 77.24 3e-155 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa015717mg 11 275 + 265 Gaps:28 36.72 798 77.82 2e-154 hypothetical protein
blastp_kegg lcl|pop:POPTR_0011s09190g 1 275 + 275 Gaps:50 41.09 791 72.31 2e-153 POPTRDRAFT_568546 hypothetical protein
blastp_kegg lcl|csv:101222668 1 273 + 273 Gaps:27 37.17 807 74.00 5e-153 DNA mismatch repair protein MSH5-like
blastp_kegg lcl|rcu:RCOM_1303030 4 273 + 270 Gaps:43 80.06 351 77.94 5e-152 hypothetical protein
blastp_uniprot_sprot sp|F4JEP5|MSH5_ARATH 12 273 + 262 Gaps:27 35.81 807 70.24 3e-140 DNA mismatch repair protein MSH5 OS Arabidopsis thaliana GN MSH5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QUM7|MSH5_MOUSE 24 276 + 253 Gaps:34 33.73 833 29.54 6e-21 MutS protein homolog 5 OS Mus musculus GN Msh5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6MG62|MSH5_RAT 24 276 + 253 Gaps:34 33.81 831 28.83 1e-19 MutS protein homolog 5 OS Rattus norvegicus GN Msh5 PE 2 SV 1
blastp_uniprot_sprot sp|O43196|MSH5_HUMAN 13 276 + 264 Gaps:34 35.01 834 27.74 1e-18 MutS protein homolog 5 OS Homo sapiens GN MSH5 PE 1 SV 1
rpsblast_cdd gnl|CDD|180056 14 253 + 240 Gaps:68 26.00 854 26.13 4e-10 PRK05399 PRK05399 DNA mismatch repair protein MutS Provisional.
rpsblast_cdd gnl|CDD|30598 12 255 + 244 Gaps:51 27.40 843 25.54 5e-08 COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|128806 207 273 + 67 Gaps:2 21.10 308 29.23 1e-07 smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
rpsblast_kog gnl|CDD|35442 2 273 + 272 Gaps:65 37.10 849 25.71 4e-12 KOG0221 KOG0221 KOG0221 Mismatch repair ATPase MSH5 (MutS family) [Replication recombination and repair].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 268 287 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 275 275 PTHR11361:SF20 none none none
Phobius 1 267 267 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 275 275 PTHR11361 none none none
Pfam 207 272 66 PF05192 none MutS domain III IPR007696
SUPERFAMILY 207 277 71 SSF48334 none none IPR007696
Gene3D 207 274 68 G3DSA:1.10.1420.10 none none none
Phobius 288 288 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting