Protein : Qrob_P0052990.2 Q. robur
Protein Identifier  ? Qrob_P0052990.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) K08741 - DNA mismatch repair protein MSH5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 515  
Kegg Orthology  K08741
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252044 16 514 + 499 Gaps:8 62.83 807 84.62 0.0 mutS protein homolog 5-like
blastp_kegg lcl|cit:102623332 16 514 + 499 Gaps:8 62.52 811 82.64 0.0 DNA mismatch repair protein MSH5-like
blastp_kegg lcl|cic:CICLE_v10010304mg 16 514 + 499 Gaps:8 63.45 799 82.64 0.0 hypothetical protein
blastp_kegg lcl|pmum:103326497 16 514 + 499 Gaps:9 62.39 811 81.82 0.0 DNA mismatch repair protein MSH5
blastp_kegg lcl|pper:PRUPE_ppa015717mg 16 514 + 499 Gaps:9 63.41 798 81.62 0.0 hypothetical protein
blastp_kegg lcl|mdm:103422994 16 514 + 499 Gaps:9 95.29 531 81.82 0.0 DNA mismatch repair protein MSH5-like
blastp_kegg lcl|fve:101304081 16 512 + 497 Gaps:9 62.30 809 81.94 0.0 DNA mismatch repair protein MSH5-like
blastp_kegg lcl|tcc:TCM_030844 16 511 + 496 Gaps:8 61.61 818 81.55 0.0 MUTS
blastp_kegg lcl|pvu:PHAVU_008G268900g 16 512 + 497 none 62.12 800 78.07 0.0 hypothetical protein
blastp_kegg lcl|gmx:100794332 16 512 + 497 Gaps:8 62.19 812 76.63 0.0 DNA mismatch repair protein MSH5-like
blastp_pdb 3thz_B 209 460 + 252 Gaps:24 29.85 918 39.42 1e-44 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thy_B 209 460 + 252 Gaps:24 29.85 918 39.42 1e-44 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thx_B 209 460 + 252 Gaps:24 29.85 918 39.42 1e-44 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thw_B 209 460 + 252 Gaps:24 29.85 918 39.42 1e-44 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 1ewr_B 82 466 + 385 Gaps:39 56.09 649 31.87 4e-35 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1ewr_A 82 466 + 385 Gaps:39 56.09 649 31.87 4e-35 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1fw6_B 82 471 + 390 Gaps:39 48.05 768 31.44 6e-35 mol:protein length:768 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1fw6_A 82 471 + 390 Gaps:39 48.05 768 31.44 6e-35 mol:protein length:768 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1nne_B 82 466 + 385 Gaps:39 47.58 765 31.87 1e-34 mol:protein length:765 DNA Mismatch Repair protein MutS
blastp_pdb 1nne_A 82 466 + 385 Gaps:39 47.58 765 31.87 1e-34 mol:protein length:765 DNA Mismatch Repair protein MutS
blastp_uniprot_sprot sp|F4JEP5|MSH5_ARATH 16 514 + 499 Gaps:8 62.83 807 75.15 0.0 DNA mismatch repair protein MSH5 OS Arabidopsis thaliana GN MSH5 PE 2 SV 1
blastp_uniprot_sprot sp|O43196|MSH5_HUMAN 28 514 + 487 Gaps:46 58.39 834 34.09 2e-67 MutS protein homolog 5 OS Homo sapiens GN MSH5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6MG62|MSH5_RAT 28 514 + 487 Gaps:46 58.60 831 34.70 1e-64 MutS protein homolog 5 OS Rattus norvegicus GN Msh5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QUM7|MSH5_MOUSE 28 514 + 487 Gaps:46 58.46 833 34.50 2e-64 MutS protein homolog 5 OS Mus musculus GN Msh5 PE 2 SV 1
blastp_uniprot_sprot sp|Q187T6|MUTS_CLOD6 81 483 + 403 Gaps:53 42.87 947 36.45 4e-56 DNA mismatch repair protein MutS OS Clostridium difficile (strain 630) GN mutS PE 3 SV 2
blastp_uniprot_sprot sp|Q24X61|MUTS_DESHY 20 483 + 464 Gaps:56 51.51 862 34.46 6e-52 DNA mismatch repair protein MutS OS Desulfitobacterium hafniense (strain Y51) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q2S254|MUTS_SALRD 82 489 + 408 Gaps:42 44.27 908 34.58 1e-51 DNA mismatch repair protein MutS OS Salinibacter ruber (strain DSM 13855 / M31) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|A9KL10|MUTS_CLOPH 75 474 + 400 Gaps:39 41.74 932 36.76 2e-51 DNA mismatch repair protein MutS OS Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q19272|MSH5_CAEEL 57 496 + 440 Gaps:34 31.85 1369 32.34 4e-50 MutS protein homolog 5 OS Caenorhabditis elegans GN msh-5 PE 2 SV 2
blastp_uniprot_sprot sp|Q895H2|MUTS_CLOTE 57 501 + 445 Gaps:44 50.28 881 33.18 9e-49 DNA mismatch repair protein MutS OS Clostridium tetani (strain Massachusetts / E88) GN mutS PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 238 464 227 G3DSA:3.40.50.300 none none IPR027417
Gene3D 44 108 65 G3DSA:1.10.1420.10 none none none
SUPERFAMILY 238 452 215 SSF52540 none none IPR027417
SUPERFAMILY 34 237 204 SSF48334 none none IPR007696
SMART 12 262 251 SM00533 none DNA-binding domain of DNA mismatch repair MUTS family IPR007696
Pfam 86 187 102 PF05190 none MutS family domain IV IPR007861
SMART 277 464 188 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
PANTHER 16 506 491 PTHR11361 none none none
ProSitePatterns 357 373 17 PS00486 none DNA mismatch repair proteins mutS family signature. IPR000432
Pfam 238 451 214 PF00488 none MutS domain V IPR000432
PANTHER 16 506 491 PTHR11361:SF20 none none none

1 Localization

Analysis Start End Length
SignalP_EUK 1 15 14

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 15   Secretory pathway 2 0.821 0.054 NON-PLANT 15