Protein : Qrob_P0052640.2 Q. robur
Protein Identifier  ? Qrob_P0052640.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K03113 - translation initiation factor eIF-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 113  
Kegg Orthology  K03113
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103501585 1 112 + 112 none 100.00 112 88.39 1e-66 protein translation factor SUI1 homolog 2
blastp_kegg lcl|csv:101214921 1 112 + 112 none 100.00 112 88.39 1e-66 protein translation factor SUI1 homolog 2-like
blastp_kegg lcl|cmo:103490142 1 112 + 112 none 100.00 112 85.71 1e-65 protein translation factor SUI1 homolog 1-like
blastp_kegg lcl|csv:101202908 1 112 + 112 none 100.00 112 85.71 1e-65 protein translation factor SUI1 homolog 1-like
blastp_kegg lcl|cam:101512087 1 112 + 112 none 100.00 112 83.93 1e-64 protein translation factor SUI1 homolog 2-like
blastp_kegg lcl|gmx:100791423 1 112 + 112 none 100.00 112 83.04 7e-64 protein translation factor SUI1 homolog 2-like
blastp_kegg lcl|pvu:PHAVU_006G043900g 1 112 + 112 none 100.00 112 83.04 1e-63 hypothetical protein
blastp_kegg lcl|pmum:103326455 1 112 + 112 none 100.00 112 83.93 1e-63 protein translation factor SUI1 homolog
blastp_kegg lcl|pper:PRUPE_ppa013625mg 1 112 + 112 none 100.00 112 83.93 1e-63 hypothetical protein
blastp_kegg lcl|mdm:103422977 1 112 + 112 none 100.00 112 84.82 2e-63 protein translation factor SUI1 homolog
blastp_pdb 2ogh_A 11 112 + 102 Gaps:1 93.52 108 56.44 4e-35 mol:protein length:108 Eukaryotic translation initiation factor eIF-
blastp_pdb 2if1_A 6 112 + 107 Gaps:3 87.30 126 51.82 3e-32 mol:protein length:126 EIF1
blastp_pdb 2xzn_F 29 111 + 83 none 82.18 101 44.58 2e-22 mol:protein length:101 EIF1
blastp_pdb 2xzm_F 29 111 + 83 none 82.18 101 44.58 2e-22 mol:protein length:101 EIF1
blastp_uniprot_sprot sp|Q94JV4|SUI12_ARATH 1 112 + 112 Gaps:1 100.00 113 74.34 5e-57 Protein translation factor SUI1 homolog 2 OS Arabidopsis thaliana GN At1g54290 PE 3 SV 1
blastp_uniprot_sprot sp|Q0D5W6|SUI1_ORYSJ 1 112 + 112 Gaps:3 100.00 115 73.04 5e-56 Protein translation factor SUI1 homolog OS Oryza sativa subsp. japonica GN GOS2 PE 3 SV 1
blastp_uniprot_sprot sp|A6MZM2|SUI1_ORYSI 1 112 + 112 Gaps:3 100.00 115 73.04 5e-56 Protein translation factor SUI1 homolog OS Oryza sativa subsp. indica GN GOS2 PE 2 SV 1
blastp_uniprot_sprot sp|P56330|SUI1_MAIZE 1 112 + 112 Gaps:3 100.00 115 73.04 6e-56 Protein translation factor SUI1 homolog OS Zea mays GN TIF PE 3 SV 1
blastp_uniprot_sprot sp|Q9SM41|SUI1_SPOST 1 112 + 112 Gaps:3 100.00 115 72.17 1e-55 Protein translation factor SUI1 homolog OS Sporobolus stapfianus PE 3 SV 1
blastp_uniprot_sprot sp|O82569|SUI1_PIMBR 1 112 + 112 Gaps:1 100.00 113 73.45 2e-55 Protein translation factor SUI1 homolog OS Pimpinella brachycarpa PE 3 SV 1
blastp_uniprot_sprot sp|P41568|SUI11_ARATH 1 112 + 112 Gaps:1 100.00 113 71.68 6e-55 Protein translation factor SUI1 homolog 1 OS Arabidopsis thaliana GN At4g27130 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SQF4|SUI1_BRAOL 1 112 + 112 Gaps:1 100.00 113 70.80 4e-54 Protein translation factor SUI1 homolog OS Brassica oleracea PE 3 SV 1
blastp_uniprot_sprot sp|O48650|SUI1_SALBA 1 112 + 112 Gaps:1 100.00 113 69.03 3e-52 Protein translation factor SUI1 homolog OS Salix bakko PE 3 SV 1
blastp_uniprot_sprot sp|P32911|SUI1_YEAST 11 112 + 102 Gaps:1 93.52 108 56.44 2e-34 Eukaryotic translation initiation factor eIF-1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SUI1 PE 1 SV 1
rpsblast_cdd gnl|CDD|130228 5 112 + 108 Gaps:2 100.00 110 58.18 4e-39 TIGR01160 SUI1_MOF2 translation initiation factor SUI1 eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
rpsblast_cdd gnl|CDD|211318 28 111 + 84 none 100.00 84 64.29 2e-34 cd11566 eIF1_SUI1 Eukaryotic initiation factor 1. eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
rpsblast_cdd gnl|CDD|201688 24 100 + 77 Gaps:7 100.00 74 37.84 5e-14 pfam01253 SUI1 Translation initiation factor SUI1.
rpsblast_cdd gnl|CDD|30373 5 110 + 106 Gaps:7 97.12 104 25.74 3e-12 COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|211317 30 110 + 81 Gaps:4 98.72 78 32.47 2e-10 cd00474 eIF1_SUI1_like Eukaryotic initiation factor 1 and related proteins. Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes archaea and some bacteria eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear.
rpsblast_kog gnl|CDD|36981 3 112 + 110 Gaps:2 100.00 112 58.04 8e-35 KOG1770 KOG1770 KOG1770 Translation initiation factor 1 (eIF-1/SUI1) [Translation ribosomal structure and biogenesis].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 5 112 108 TIGR01160 none SUI1_MOF2: translation initiation factor SUI1 IPR005874
SUPERFAMILY 4 112 109 SSF55159 none none IPR001950
Pfam 25 104 80 PF01253 none Translation initiation factor SUI1 IPR001950
ProSiteProfiles 30 100 71 PS50296 none Translation initiation factor SUI1 family profile. IPR001950
PANTHER 6 112 107 PTHR10388 none none none
Gene3D 4 112 109 G3DSA:3.30.780.10 none none IPR001950
PIRSF 1 112 112 PIRSF004499 none none IPR005874

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting