Protein : Qrob_P0047110.2 Q. robur
Protein Identifier  ? Qrob_P0047110.2 Organism . Name  Quercus robur
Protein Description  (M=127) PF13947 - Wall-associated receptor kinase galacturonan-binding Alias (in v1)  Qrob_P0271570.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 278  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0030247 polysaccharide binding Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_012098 5 276 + 272 Gaps:1 90.64 299 80.81 2e-164 Uncharacterized protein isoform 1
blastp_kegg lcl|gmx:100818252 9 276 + 268 Gaps:5 85.30 313 82.02 1e-162 uncharacterized LOC100818252
blastp_kegg lcl|mdm:103437706 6 276 + 271 Gaps:4 88.35 309 77.29 7e-161 uncharacterized LOC103437706
blastp_kegg lcl|pvu:PHAVU_003G201900g 7 276 + 270 Gaps:4 87.01 308 79.85 4e-160 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa009972mg 10 277 + 268 Gaps:7 97.77 269 84.03 7e-160 hypothetical protein
blastp_kegg lcl|fve:101305943 30 276 + 247 Gaps:1 82.27 299 84.96 1e-159 uncharacterized protein LOC101305943
blastp_kegg lcl|pmum:103343113 2 276 + 275 Gaps:7 85.17 317 81.11 3e-159 uncharacterized LOC103343113
blastp_kegg lcl|mdm:103431150 7 276 + 270 Gaps:5 87.99 308 77.86 2e-155 uncharacterized LOC103431150
blastp_kegg lcl|mdm:103415234 7 276 + 270 Gaps:5 87.99 308 77.86 2e-155 uncharacterized LOC103415234
blastp_kegg lcl|cit:102626193 8 275 + 268 Gaps:2 87.50 304 78.57 5e-155 hypothetical protein
rpsblast_cdd gnl|CDD|206118 32 135 + 104 Gaps:7 97.17 106 33.01 1e-14 pfam13947 GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding. This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 18 25 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 31 134 104 PF13947 none Wall-associated receptor kinase galacturonan-binding IPR025287
Phobius 26 277 252 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none

1 Localization

Analysis Start End Length
SignalP_EUK 1 24 23

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 1 0.978 0.033 NON-PLANT 24