Protein : Qrob_P0044820.2 Q. robur
Protein Identifier  ? Qrob_P0044820.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K02349 - DNA polymerase theta subunit [EC:2.7.7.7] Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 2213  
Kegg Orthology  K02349
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0006261 DNA-dependent DNA replication A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103320159 1 2211 + 2211 Gaps:56 100.00 2169 75.33 0.0 DNA polymerase theta
blastp_kegg lcl|pper:PRUPE_ppa020963mg 1 2211 + 2211 Gaps:56 100.00 2169 75.20 0.0 hypothetical protein
blastp_kegg lcl|cit:102618799 1 2210 + 2210 Gaps:54 99.59 2191 72.73 0.0 DNA polymerase theta-like
blastp_kegg lcl|fve:101308155 1 2211 + 2211 Gaps:72 99.68 2164 74.87 0.0 DNA polymerase theta-like
blastp_kegg lcl|pop:POPTR_0018s00860g 3 2211 + 2209 Gaps:71 99.49 2173 73.73 0.0 POPTRDRAFT_578118 hypothetical protein
blastp_kegg lcl|pxb:103937062 1 2211 + 2211 Gaps:72 99.54 2171 73.76 0.0 helicase and polymerase-containing protein TEBICHI
blastp_kegg lcl|mdm:103441318 1 2211 + 2211 Gaps:68 99.54 2169 73.55 0.0 DNA polymerase theta
blastp_kegg lcl|vvi:100264582 1 2210 + 2210 Gaps:64 99.40 2181 72.92 0.0 DNA polymerase theta-like
blastp_kegg lcl|tcc:TCM_037134 1 2211 + 2211 Gaps:114 99.58 2146 72.91 0.0 Helicases ATP-dependent helicases nucleic acid binding ATP binding DNA-directed DNA polymerases DNA binding
blastp_kegg lcl|rcu:RCOM_0803260 1 2193 + 2193 Gaps:97 98.33 2154 71.29 0.0 DNA polymerase theta putative (EC:2.7.7.7)
blastp_pdb 2xy7_A 1764 2201 + 438 Gaps:39 68.79 580 38.35 5e-64 mol:protein length:580 DNA POLYMERASE I
blastp_pdb 2xy5_A 1764 2201 + 438 Gaps:39 68.67 581 38.35 5e-64 mol:protein length:581 DNA POLYMERASE I
blastp_pdb 2xy6_A 1764 2201 + 438 Gaps:39 68.67 581 38.35 5e-64 mol:protein length:581 DNA POLYMERASE I
blastp_pdb 2xo7_A 1764 2201 + 438 Gaps:39 68.79 580 38.35 6e-64 mol:protein length:580 DNA POLYMERASE I
blastp_pdb 2y1j_A 1764 2201 + 438 Gaps:39 68.79 580 38.35 5e-63 mol:protein length:580 DNA POLYMERASE I
blastp_pdb 2y1i_A 1764 2201 + 438 Gaps:39 68.79 580 38.35 5e-63 mol:protein length:580 DNA POLYMERASE I
blastp_pdb 3ti0_D 1764 2201 + 438 Gaps:39 67.40 592 38.10 2e-62 mol:protein length:592 DNA polymerase I
blastp_pdb 3ti0_A 1764 2201 + 438 Gaps:39 67.40 592 38.10 2e-62 mol:protein length:592 DNA polymerase I
blastp_pdb 3thv_D 1764 2201 + 438 Gaps:39 67.40 592 38.10 2e-62 mol:protein length:592 DNA polymerase I
blastp_pdb 3thv_A 1764 2201 + 438 Gaps:39 67.40 592 38.10 2e-62 mol:protein length:592 DNA polymerase I
blastp_uniprot_sprot sp|O75417|DPOLQ_HUMAN 526 2207 + 1682 Gaps:175 52.66 2590 38.93 2e-176 DNA polymerase theta OS Homo sapiens GN POLQ PE 1 SV 2
blastp_uniprot_sprot sp|Q8TDG4|HELQ_HUMAN 534 1332 + 799 Gaps:105 68.66 1101 38.49 2e-131 Helicase POLQ-like OS Homo sapiens GN HELQ PE 1 SV 2
blastp_uniprot_sprot sp|Q2VPA6|HELQ_MOUSE 534 1291 + 758 Gaps:96 67.91 1069 39.39 4e-129 Helicase POLQ-like OS Mus musculus GN Helq PE 2 SV 2
blastp_uniprot_sprot sp|Q7Z5Q5|DPOLN_HUMAN 1681 2208 + 528 Gaps:42 57.11 900 33.66 4e-71 DNA polymerase nu OS Homo sapiens GN POLN PE 1 SV 2
blastp_uniprot_sprot sp|Q7TQ07|DPOLN_MOUSE 1681 2208 + 528 Gaps:68 59.49 864 34.24 1e-65 DNA polymerase nu OS Mus musculus GN Poln PE 2 SV 2
blastp_uniprot_sprot sp|P52028|DPO1T_THET8 1718 2203 + 486 Gaps:51 52.64 834 39.41 3e-63 DNA polymerase I thermostable OS Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN polA PE 3 SV 2
blastp_uniprot_sprot sp|P80194|DPO1_THECA 1712 2203 + 492 Gaps:51 53.36 834 38.20 2e-62 DNA polymerase I thermostable OS Thermus caldophilus GN polA PE 1 SV 2
blastp_uniprot_sprot sp|P52026|DPO1_GEOSE 1737 2201 + 465 Gaps:39 48.63 876 37.79 6e-62 DNA polymerase I OS Geobacillus stearothermophilus GN polA PE 1 SV 2
blastp_uniprot_sprot sp|Q04957|DPO1_BACCA 1737 2201 + 465 Gaps:40 48.69 877 37.47 9e-62 DNA polymerase I OS Bacillus caldotenax GN polA PE 1 SV 1
blastp_uniprot_sprot sp|O52225|DPO1_THEFI 1756 2201 + 446 Gaps:46 48.74 833 41.63 1e-61 DNA polymerase I thermostable OS Thermus filiformis GN polA PE 1 SV 1

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 560 752 193 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SUPERFAMILY 1176 1288 113 SSF158702 none none none
ProSiteProfiles 792 985 194 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Pfam 562 737 176 PF00270 none DEAD/DEAH box helicase IPR011545
Gene3D 1970 2114 145 G3DSA:1.10.150.20 none none none
PANTHER 1106 1162 57 PTHR11752:SF48 none none none
Gene3D 1910 1969 60 G3DSA:3.30.70.370 none none none
Gene3D 2115 2203 89 G3DSA:3.30.70.370 none none none
SMART 861 943 83 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 526 700 175 PTHR11752 none none none
SUPERFAMILY 1760 2204 445 SSF56672 none none none
SMART 546 761 216 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 1248 1293 46 G3DSA:1.10.150.20 none none none
Gene3D 1518 1779 262 G3DSA:3.30.420.10 none none IPR012337
SUPERFAMILY 770 826 57 SSF52540 none none IPR027417
SUPERFAMILY 867 957 91 SSF52540 none none IPR027417
SUPERFAMILY 563 737 175 SSF52540 none none IPR027417
Pfam 871 943 73 PF00271 none Helicase conserved C-terminal domain IPR001650
Gene3D 533 751 219 G3DSA:3.40.50.300 none none IPR027417
PANTHER 1178 2056 879 PTHR11752 none none none
PANTHER 1106 1162 57 PTHR11752 none none none
PANTHER 718 1089 372 PTHR11752 none none none
Gene3D 791 831 41 G3DSA:3.40.50.300 none none IPR027417
Gene3D 870 952 83 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1782 1909 128 G3DSA:1.20.1060.10 none none none
PRINTS 2016 2041 26 PR00868 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-polymerase family A (pol I) signature IPR002298
PRINTS 2075 2086 12 PR00868 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-polymerase family A (pol I) signature IPR002298
PRINTS 1899 1921 23 PR00868 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-polymerase family A (pol I) signature IPR002298
PRINTS 2053 2064 12 PR00868 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-polymerase family A (pol I) signature IPR002298
PRINTS 2152 2165 14 PR00868 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-polymerase family A (pol I) signature IPR002298

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting