Protein : Qrob_P0043960.2 Q. robur
Protein Identifier  ? Qrob_P0043960.2 Organism . Name  Quercus robur
Score  21.5 Score Type  egn
Protein Description  (M=1) K15255 - ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 527  
Kegg Orthology  K15255
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0000723 telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences.
GO:0003678 DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328752 1 496 + 496 Gaps:5 96.12 515 64.65 0.0 ATP-dependent DNA helicase PIF1
blastp_kegg lcl|pper:PRUPE_ppa019701mg 1 481 + 481 Gaps:5 87.43 549 66.25 0.0 hypothetical protein
blastp_kegg lcl|fve:101298246 9 511 + 503 Gaps:6 96.50 515 63.38 0.0 DNA repair and recombination protein pif1 mitochondrial-like
blastp_kegg lcl|mdm:103405193 3 489 + 487 Gaps:9 90.19 530 63.81 0.0 ATP-dependent DNA helicase PIF1-like
blastp_kegg lcl|gmx:102665981 3 482 + 480 Gaps:10 94.96 516 58.57 0.0 ATP-dependent DNA helicase PIF1-like
blastp_kegg lcl|tcc:TCM_001831 1 471 + 471 Gaps:6 97.89 475 60.65 0.0 DNA repair and recombination protein pif1 putative
blastp_kegg lcl|pxb:103966868 3 439 + 437 Gaps:9 73.29 584 64.25 0.0 ATP-dependent DNA helicase PIF1-like
blastp_kegg lcl|pop:POPTR_0007s09900g 1 476 + 476 Gaps:11 88.33 540 59.75 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1195020 3 519 + 517 Gaps:15 98.83 512 55.93 0.0 hypothetical protein
blastp_kegg lcl|sly:101256894 1 490 + 490 Gaps:20 99.60 498 57.06 0.0 ATP-dependent DNA helicase PIF1-like
blastp_pdb 3gpl_B 41 249 + 209 Gaps:42 31.53 574 32.60 2e-06 mol:protein length:574 Exodeoxyribonuclease V subunit RecD putativ
blastp_pdb 3gpl_A 41 249 + 209 Gaps:42 31.53 574 32.60 2e-06 mol:protein length:574 Exodeoxyribonuclease V subunit RecD putativ
blastp_pdb 3gp8_A 41 249 + 209 Gaps:42 31.53 574 32.60 2e-06 mol:protein length:574 Exodeoxyribonuclease V subunit RecD putativ
blastp_pdb 3e1s_A 41 249 + 209 Gaps:42 31.53 574 32.60 2e-06 mol:protein length:574 Exodeoxyribonuclease V subunit RecD
blastp_uniprot_sprot sp|Q0R4F1|PIF1_XENLA 31 478 + 448 Gaps:27 69.45 635 42.18 2e-98 ATP-dependent DNA helicase PIF1 OS Xenopus laevis GN pif1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UUA2|PIF1_SCHPO 17 493 + 477 Gaps:61 64.35 805 38.03 1e-97 ATP-dependent DNA helicase pfh1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pfh1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5AXT5|PIF1_EMENI 17 479 + 463 Gaps:64 69.13 745 36.70 2e-90 ATP-dependent DNA helicase PIF1 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN pif1 PE 3 SV 2
blastp_uniprot_sprot sp|Q9H611|PIF1_HUMAN 44 484 + 441 Gaps:21 66.15 641 40.57 2e-90 ATP-dependent DNA helicase PIF1 OS Homo sapiens GN PIF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q1HG60|PIF1_RAT 42 488 + 447 Gaps:27 68.76 637 39.73 1e-88 ATP-dependent DNA helicase PIF1 OS Rattus norvegicus GN Pif1 PE 2 SV 1
blastp_uniprot_sprot sp|Q80SX8|PIF1_MOUSE 42 488 + 447 Gaps:27 67.38 650 39.50 2e-87 ATP-dependent DNA helicase PIF1 OS Mus musculus GN Pif1 PE 1 SV 2
blastp_uniprot_sprot sp|Q7ZV90|PIF1_DANRE 49 478 + 430 Gaps:29 64.63 639 43.10 4e-86 ATP-dependent DNA helicase PIF1 OS Danio rerio GN pif1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QSK3|VF030_IIV6 49 484 + 436 Gaps:100 96.60 530 31.64 2e-67 Uncharacterized protein 030L OS Invertebrate iridescent virus 6 GN IIV6-030L PE 3 SV 1
blastp_uniprot_sprot sp|A6ZM04|PIF1_YEAS7 51 471 + 421 Gaps:20 49.24 859 44.68 2e-66 ATP-dependent DNA helicase PIF1 OS Saccharomyces cerevisiae (strain YJM789) GN PIF1 PE 3 SV 1
blastp_uniprot_sprot sp|P07271|PIF1_YEAST 51 471 + 421 Gaps:20 49.24 859 44.68 2e-66 ATP-dependent DNA helicase PIF1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PIF1 PE 1 SV 2
rpsblast_cdd gnl|CDD|191413 51 354 + 304 Gaps:74 99.45 364 26.52 4e-46 pfam05970 PIF1 PIF1-like helicase. This family includes homologues of the PIF1 helicase which inhibits telomerase activity and is cell cycle regulated. This family includes a large number of largely uncharacterized plant proteins. This family includes a P-loop motif that is involved in nucleotide binding.
rpsblast_cdd gnl|CDD|30853 19 467 + 449 Gaps:101 56.32 696 26.02 1e-21 COG0507 RecD ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162366 24 448 + 425 Gaps:86 55.97 720 24.81 5e-19 TIGR01448 recD_rel helicase putative RecD/TraA family. This model describes a family similar to RecD the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family however are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
rpsblast_cdd gnl|CDD|162365 52 446 + 395 Gaps:134 70.82 586 23.61 4e-18 TIGR01447 recD exodeoxyribonuclease V alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree has an additional N-terminal extension of about 200 residues and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
rpsblast_cdd gnl|CDD|205782 49 268 + 220 Gaps:43 100.00 195 27.69 2e-17 pfam13604 AAA_30 AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
rpsblast_cdd gnl|CDD|205579 61 190 + 130 Gaps:14 93.55 124 25.86 2e-08 pfam13401 AAA_22 AAA domain.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 180 356 177 SSF52540 none none IPR027417
SUPERFAMILY 401 473 73 SSF52540 none none IPR027417
Gene3D 190 295 106 G3DSA:3.40.50.300 none none IPR027417
Gene3D 397 448 52 G3DSA:3.40.50.300 none none IPR027417
Pfam 51 353 303 PF05970 none PIF1-like helicase IPR010285
PANTHER 47 478 432 PTHR23274 none none none
SMART 63 358 296 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SUPERFAMILY 32 198 167 SSF52540 none none IPR027417
SUPERFAMILY 228 248 21 SSF52540 none none IPR027417
Gene3D 50 189 140 G3DSA:3.40.50.300 none none IPR027417

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting