Protein : Qrob_P0040640.2 Q. robur
Protein Identifier  ? Qrob_P0040640.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K02997 - small subunit ribosomal protein S9e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 170  
Kegg Orthology  K02997
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103700527 1 168 + 168 Gaps:29 100.00 197 67.51 6e-84 40S ribosomal protein S9-2
blastp_kegg lcl|rcu:RCOM_1514770 1 158 + 158 Gaps:29 94.92 197 70.05 4e-81 40S ribosomal protein S9 putative
blastp_kegg lcl|rcu:RCOM_0835620 1 158 + 158 Gaps:29 95.41 196 68.45 9e-81 40S ribosomal protein S9 putative
blastp_kegg lcl|sot:102594083 1 158 + 158 Gaps:29 94.92 197 67.91 2e-80 40S ribosomal protein S9-2-like
blastp_kegg lcl|pop:POPTR_0018s07520g 1 158 + 158 Gaps:29 94.92 197 68.45 3e-80 POPTRDRAFT_1105522 hypothetical protein
blastp_kegg lcl|pop:POPTR_0006s22630g 1 158 + 158 Gaps:29 94.92 197 68.45 3e-80 hypothetical protein
blastp_kegg lcl|sly:101261708 1 158 + 158 Gaps:29 94.92 197 67.91 9e-80 40S ribosomal protein S9-2-like
blastp_kegg lcl|sly:101257063 1 158 + 158 Gaps:29 94.92 197 67.91 9e-80 40S ribosomal protein S9-2-like
blastp_kegg lcl|sly:101253922 1 158 + 158 Gaps:29 94.92 197 67.91 9e-80 40S ribosomal protein S9-2-like
blastp_kegg lcl|sly:101253011 1 158 + 158 Gaps:29 94.92 197 67.91 9e-80 40S ribosomal protein S9-2-like
blastp_pdb 3iz6_C 8 154 + 147 Gaps:31 91.28 195 63.48 4e-66 mol:protein length:195 40S ribosomal protein S9 (S4p)
blastp_pdb 3u5g_J 8 160 + 153 Gaps:31 91.37 197 51.67 3e-53 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3u5c_J 8 160 + 153 Gaps:31 91.37 197 51.67 3e-53 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3o30_E 8 160 + 153 Gaps:31 91.37 197 51.67 3e-53 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3o2z_E 8 160 + 153 Gaps:31 91.37 197 51.67 3e-53 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3izb_C 8 160 + 153 Gaps:31 91.37 197 51.67 3e-53 mol:protein length:197 40S ribosomal protein rpS9 (S4p)
blastp_pdb 2xzn_D 7 154 + 148 Gaps:29 97.79 181 47.46 2e-48 mol:protein length:181 RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
blastp_pdb 2xzm_D 7 154 + 148 Gaps:29 97.79 181 47.46 2e-48 mol:protein length:181 RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
blastp_pdb 1s1h_D 21 160 + 140 Gaps:31 93.30 179 52.10 2e-47 mol:protein length:179 40S ribosomal protein S9-A
blastp_pdb 3jyv_D 8 136 + 129 Gaps:29 100.00 158 49.37 3e-44 mol:protein length:158 40S ribosomal protein S9(A)
blastp_uniprot_sprot sp|Q9FLF0|RS92_ARATH 1 158 + 158 Gaps:29 94.92 197 65.24 2e-78 40S ribosomal protein S9-2 OS Arabidopsis thaliana GN RPS9C PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXG1|RS91_ARATH 1 158 + 158 Gaps:29 94.44 198 63.64 4e-75 40S ribosomal protein S9-1 OS Arabidopsis thaliana GN RPS9B PE 1 SV 1
blastp_uniprot_sprot sp|P55935|RS9_DROME 10 151 + 142 Gaps:29 87.69 195 56.14 1e-55 40S ribosomal protein S9 OS Drosophila melanogaster GN RpS9 PE 1 SV 2
blastp_uniprot_sprot sp|P29314|RS9_RAT 12 166 + 155 Gaps:29 94.85 194 52.17 5e-53 40S ribosomal protein S9 OS Rattus norvegicus GN Rps9 PE 1 SV 4
blastp_uniprot_sprot sp|A9L913|RS9_PAPAN 12 166 + 155 Gaps:29 94.85 194 52.17 5e-53 40S ribosomal protein S9 OS Papio anubis GN RPS9 PE 3 SV 1
blastp_uniprot_sprot sp|Q6ZWN5|RS9_MOUSE 12 166 + 155 Gaps:29 94.85 194 52.17 5e-53 40S ribosomal protein S9 OS Mus musculus GN Rps9 PE 2 SV 3
blastp_uniprot_sprot sp|P46781|RS9_HUMAN 12 166 + 155 Gaps:29 94.85 194 52.17 5e-53 40S ribosomal protein S9 OS Homo sapiens GN RPS9 PE 1 SV 3
blastp_uniprot_sprot sp|A6QLG5|RS9_BOVIN 12 166 + 155 Gaps:29 94.85 194 52.17 5e-53 40S ribosomal protein S9 OS Bos taurus GN RPS9 PE 2 SV 1
blastp_uniprot_sprot sp|O13516|RS9A_YEAST 8 160 + 153 Gaps:31 91.37 197 51.67 1e-52 40S ribosomal protein S9-A OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPS9A PE 1 SV 3
blastp_uniprot_sprot sp|P05755|RS9B_YEAST 8 149 + 142 Gaps:29 87.69 195 52.05 3e-52 40S ribosomal protein S9-B OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPS9B PE 1 SV 4

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 78 102 25 PS00632 none Ribosomal protein S4 signature. IPR018079
Gene3D 79 125 47 G3DSA:3.10.290.10 none none IPR002942
SUPERFAMILY 12 132 121 SSF55174 none none none
TIGRFAM 64 137 74 TIGR01018 none uS4_arch: ribosomal protein uS4 IPR005710
Pfam 80 123 44 PF01479 none S4 domain IPR002942
Pfam 7 89 83 PF00163 none Ribosomal protein S4/S9 N-terminal domain IPR001912
PANTHER 8 169 162 PTHR11831 none none IPR022801
ProSiteProfiles 80 151 72 PS50889 none S4 RNA-binding domain profile. IPR002942
SMART 80 144 65 SM00363 none S4 RNA-binding domain IPR002942

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting