Protein : Qrob_P0039700.2 Q. robur
Protein Identifier  ? Qrob_P0039700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR12565:SF77 - TRANSCRIPTION FACTOR AIG1-RELATED (PTHR12565:SF77) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 355  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_011873 1 351 + 351 Gaps:13 98.57 349 86.63 0.0 Basic helix-loop-helix DNA-binding superfamily protein
blastp_kegg lcl|vvi:100250878 1 354 + 354 Gaps:15 100.00 349 85.39 0.0 transcription factor bHLH30-like
blastp_kegg lcl|pop:POPTR_0008s11490g 1 354 + 354 Gaps:18 100.00 352 81.82 9e-178 POPTRDRAFT_766018 basic helix-loop-helix family protein
blastp_kegg lcl|pop:POPTR_0010s14010g 1 354 + 354 Gaps:21 100.00 359 79.11 2e-175 POPTRDRAFT_769699 basic helix-loop-helix family protein
blastp_kegg lcl|rcu:RCOM_0705340 1 354 + 354 Gaps:37 100.00 367 76.57 2e-164 DNA binding protein putative
blastp_kegg lcl|cic:CICLE_v10031900mg 1 354 + 354 Gaps:20 100.00 364 76.92 3e-162 hypothetical protein
blastp_kegg lcl|cit:102620654 1 354 + 354 Gaps:21 100.00 365 76.44 2e-161 transcription factor bHLH30-like
blastp_kegg lcl|mdm:103402730 1 354 + 354 Gaps:48 99.71 349 78.16 2e-156 transcription factor bHLH30-like
blastp_kegg lcl|pxb:103947032 1 354 + 354 Gaps:50 99.72 351 78.57 2e-156 transcription factor bHLH30
blastp_kegg lcl|gmx:100779653 4 354 + 351 Gaps:48 99.73 376 73.33 7e-156 transcription factor bHLH30-like
blastp_uniprot_sprot sp|Q9S7Y1|BH030_ARATH 1 343 + 343 Gaps:46 94.84 368 60.17 4e-108 Transcription factor bHLH30 OS Arabidopsis thaliana GN BHLH30 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LS08|BH032_ARATH 1 345 + 345 Gaps:81 97.67 344 54.46 1e-89 Transcription factor AIG1 OS Arabidopsis thaliana GN BHLH32 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LET0|BH107_ARATH 156 330 + 175 Gaps:19 72.17 230 46.99 3e-39 Putative transcription factor bHLH107 OS Arabidopsis thaliana GN BHLH107 PE 2 SV 1
blastp_uniprot_sprot sp|O80674|BH106_ARATH 148 330 + 183 Gaps:30 67.59 253 50.29 1e-36 Transcription factor bHLH106 OS Arabidopsis thaliana GN BHLH106 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XEF0|BH051_ARATH 160 285 + 126 Gaps:14 51.97 254 46.97 3e-28 Transcription factor bHLH51 OS Arabidopsis thaliana GN BHLH51 PE 2 SV 1
blastp_uniprot_sprot sp|P0CB25|BH131_ARATH 163 292 + 130 Gaps:4 49.22 256 38.89 4e-23 Transcription factor bHLH131 OS Arabidopsis thaliana GN BHLH131 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GZ38|UNE10_ARATH 164 220 + 57 none 14.29 399 43.86 8e-09 Transcription factor UNE10 OS Arabidopsis thaliana GN UNE10 PE 2 SV 1
blastp_uniprot_sprot sp|P13027|ARRS_MAIZE 159 216 + 58 none 9.48 612 46.55 2e-08 Anthocyanin regulatory R-S protein OS Zea mays GN R-S PE 2 SV 1
blastp_uniprot_sprot sp|E3SXU4|BHLHW_PEA 165 290 + 126 Gaps:37 23.47 652 30.07 2e-08 Basic helix-loop-helix protein A OS Pisum sativum GN BHLH PE 4 SV 1
blastp_uniprot_sprot sp|Q9ZPY8|AIB_ARATH 167 239 + 73 Gaps:4 13.60 566 38.96 2e-08 Transcription factor ABA-INDUCIBLE bHLH-TYPE OS Arabidopsis thaliana GN AIB PE 2 SV 2
rpsblast_cdd gnl|CDD|200925 166 213 + 48 Gaps:2 96.15 52 46.00 7e-09 pfam00010 HLH Helix-loop-helix DNA-binding domain.
rpsblast_cdd gnl|CDD|197674 169 215 + 47 Gaps:3 94.34 53 40.00 3e-08 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|28964 166 215 + 50 Gaps:3 88.33 60 41.51 5e-08 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 248 300 53 G3DSA:3.30.70.260 none none none
SMART 169 218 50 SM00353 none helix loop helix domain IPR011598
PANTHER 6 354 349 PTHR12565:SF77 none none none
PANTHER 6 354 349 PTHR12565 none none none
SUPERFAMILY 167 219 53 SSF47459 none none IPR011598
Pfam 166 212 47 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
ProSiteProfiles 163 212 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
Gene3D 167 221 55 G3DSA:4.10.280.10 none none IPR011598

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting