Protein : Qrob_P0036700.2 Q. robur
Protein Identifier  ? Qrob_P0036700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03139 - transcription initiation factor TFIIF subunit beta [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 267  
Kegg Orthology  K03139
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006367 transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
GO:0005674 transcription factor TFIIF complex A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation.
GO:0006366 transcription from RNA polymerase II promoter The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103488014 3 266 + 264 Gaps:5 99.62 260 85.71 1e-165 transcription initiation factor IIF subunit beta-like
blastp_kegg lcl|csv:101210064 3 266 + 264 Gaps:5 99.62 260 85.33 7e-165 transcription initiation factor IIF subunit beta-like
blastp_kegg lcl|pmum:103321309 1 263 + 263 Gaps:6 99.23 261 84.17 5e-159 transcription initiation factor IIF subunit beta
blastp_kegg lcl|pper:PRUPE_ppa010160mg 1 263 + 263 Gaps:6 99.23 261 83.78 2e-158 hypothetical protein
blastp_kegg lcl|gmx:100784080 1 266 + 266 Gaps:8 100.00 262 83.97 5e-156 transcription initiation factor IIF subunit beta-like
blastp_kegg lcl|pop:POPTR_0005s25520g 1 266 + 266 Gaps:11 100.00 261 83.52 5e-156 POPTRDRAFT_652001 hypothetical protein
blastp_kegg lcl|gmx:100788473 1 266 + 266 Gaps:8 100.00 262 85.11 9e-156 transcription initiation factor IIF subunit beta-like
blastp_kegg lcl|pop:POPTR_0002s03040g 1 266 + 266 Gaps:9 100.00 265 81.89 7e-155 POPTRDRAFT_830044 hypothetical protein
blastp_kegg lcl|tcc:TCM_034139 1 266 + 266 Gaps:11 100.00 259 83.01 1e-154 JHL18I08.10 protein isoform 1
blastp_kegg lcl|pvu:PHAVU_009G013500g 1 266 + 266 Gaps:7 100.00 261 83.52 7e-153 hypothetical protein
blastp_pdb 2bby_A 192 257 + 66 none 95.65 69 45.45 6e-12 mol:protein length:69 RAP30
blastp_pdb 1bby_A 192 257 + 66 none 95.65 69 45.45 6e-12 mol:protein length:69 RAP30
blastp_uniprot_sprot sp|O94424|T2FB_SCHPO 3 266 + 264 Gaps:14 82.08 307 31.35 1e-27 Transcription initiation factor IIF subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tfg2 PE 1 SV 1
blastp_uniprot_sprot sp|P41900|T2FB_DROME 14 257 + 244 Gaps:27 87.73 277 29.22 5e-19 General transcription factor IIF subunit 2 OS Drosophila melanogaster GN TfIIFbeta PE 2 SV 2
blastp_uniprot_sprot sp|Q01750|T2FB_RAT 14 257 + 244 Gaps:31 93.57 249 31.33 1e-18 General transcription factor IIF subunit 2 OS Rattus norvegicus GN Gtf2f2 PE 2 SV 1
blastp_uniprot_sprot sp|Q2T9L9|T2FB_BOVIN 14 257 + 244 Gaps:31 93.57 249 30.90 1e-18 General transcription factor IIF subunit 2 OS Bos taurus GN GTF2F2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8R0A0|T2FB_MOUSE 14 257 + 244 Gaps:31 93.57 249 30.90 3e-18 General transcription factor IIF subunit 2 OS Mus musculus GN Gtf2f2 PE 1 SV 1
blastp_uniprot_sprot sp|P13984|T2FB_HUMAN 14 257 + 244 Gaps:27 93.57 249 30.47 4e-18 General transcription factor IIF subunit 2 OS Homo sapiens GN GTF2F2 PE 1 SV 2
blastp_uniprot_sprot sp|Q03123|T2FB_XENLA 14 257 + 244 Gaps:31 93.56 264 27.53 4e-18 General transcription factor IIF subunit 2 OS Xenopus laevis GN gtf2f2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54KT7|T2FB_DICDI 15 257 + 243 Gaps:54 90.87 241 32.42 4e-14 General transcription factor IIF subunit 2 OS Dictyostelium discoideum GN gtf2f2 PE 3 SV 2
blastp_uniprot_sprot sp|P41896|T2FB_YEAST 110 262 + 153 Gaps:4 37.75 400 33.77 4e-10 Transcription initiation factor IIF subunit beta OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TFG2 PE 1 SV 2
rpsblast_cdd gnl|CDD|202183 14 258 + 245 Gaps:36 99.23 259 30.74 4e-49 pfam02270 TFIIF_beta Transcription initiation factor IIF beta subunit. Accurate transcription in vivo requires at least six general transcription initiation factors in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter.
rpsblast_cdd gnl|CDD|34693 14 262 + 249 Gaps:11 80.13 297 32.35 2e-32 COG5090 TFG2 Transcription initiation factor IIF small subunit (RAP30) [Transcription].
rpsblast_kog gnl|CDD|38116 15 266 + 252 Gaps:15 95.67 254 40.74 2e-64 KOG2905 KOG2905 KOG2905 Transcription initiation factor IIF small subunit (RAP30) [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 13 126 114 SSF50916 "Reactome:REACT_1675","Reactome:REACT_1788","Reactome:REACT_1892","Reactome:REACT_6185","Reactome:REACT_71","Reactome:REACT_769" none IPR011039
Gene3D 192 258 67 G3DSA:1.10.10.10 none none IPR011991
Pfam 14 104 91 PF02270 none Transcription initiation factor IIF, beta subunit IPR003196
Pfam 109 258 150 PF02270 none Transcription initiation factor IIF, beta subunit IPR003196
PANTHER 14 262 249 PTHR10445 none none IPR003196
PANTHER 14 262 249 PTHR10445:SF0 none none none
SUPERFAMILY 192 258 67 SSF46785 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting