Protein : Qrob_P0035970.2 Q. robur
Protein Identifier  ? Qrob_P0035970.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED (PTHR22849:SF4) Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1016  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0004842 ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
GO:0016567 protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000746mg 1 1015 + 1015 Gaps:2 100.00 1015 79.70 0.0 hypothetical protein
blastp_kegg lcl|pmum:103323955 1 1015 + 1015 Gaps:2 100.00 1015 79.51 0.0 U-box domain-containing protein 43-like
blastp_kegg lcl|fve:101306713 1 1015 + 1015 Gaps:2 100.00 1013 77.89 0.0 U-box domain-containing protein 43-like
blastp_kegg lcl|pop:POPTR_0010s08980g 9 1015 + 1007 Gaps:1 97.67 1032 76.98 0.0 POPTRDRAFT_566162 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10004235mg 1 1015 + 1015 Gaps:5 100.00 1012 77.27 0.0 hypothetical protein
blastp_kegg lcl|cit:102609247 1 1015 + 1015 Gaps:5 100.00 1012 77.17 0.0 putative U-box domain-containing protein 42-like
blastp_kegg lcl|pxb:103929770 1 1014 + 1014 Gaps:3 100.00 1015 77.24 0.0 U-box domain-containing protein 43-like
blastp_kegg lcl|tcc:TCM_020756 1 992 + 992 Gaps:1 99.70 996 78.05 0.0 ARM repeat superfamily protein isoform 1
blastp_kegg lcl|rcu:RCOM_0470880 1 1015 + 1015 Gaps:2 100.00 1017 76.50 0.0 E3 ubiquitin ligase PUB14 putative
blastp_kegg lcl|pxb:103940572 1 1014 + 1014 Gaps:3 100.00 1015 77.24 0.0 U-box domain-containing protein 43-like
blastp_pdb 1t1h_A 264 330 + 67 none 85.90 78 43.28 2e-07 mol:protein length:78 armadillo repeat containing protein
blastp_uniprot_sprot sp|Q9CAA7|PUB42_ARATH 185 1010 + 826 Gaps:85 82.58 1033 25.67 2e-37 Putative U-box domain-containing protein 42 OS Arabidopsis thaliana GN PUB42 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LM76|PUB44_ARATH 263 973 + 711 Gaps:60 92.51 801 28.34 1e-36 U-box domain-containing protein 44 OS Arabidopsis thaliana GN PUB44 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFX2|PUB43_ARATH 263 973 + 711 Gaps:60 92.36 811 27.77 4e-36 U-box domain-containing protein 43 OS Arabidopsis thaliana GN PUB43 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XEZ8|PUB2_ARATH 153 596 + 444 Gaps:55 63.51 707 27.84 2e-15 U-box domain-containing protein 2 OS Arabidopsis thaliana GN PUB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SNC6|PUB13_ARATH 91 620 + 530 Gaps:52 76.06 660 23.71 4e-10 U-box domain-containing protein 13 OS Arabidopsis thaliana GN PUB13 PE 1 SV 1
blastp_uniprot_sprot sp|O22193|PUB4_ARATH 153 713 + 561 Gaps:32 48.43 826 30.50 7e-10 U-box domain-containing protein 4 OS Arabidopsis thaliana GN PUB4 PE 1 SV 3
blastp_uniprot_sprot sp|Q5VRH9|PUB12_ORYSJ 78 620 + 543 Gaps:75 82.16 611 24.90 7e-10 U-box domain-containing protein 12 OS Oryza sativa subsp. japonica GN PUB12 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GWV5|PUB3_ARATH 69 330 + 262 Gaps:24 31.84 760 27.69 4e-09 U-box domain-containing protein 3 OS Arabidopsis thaliana GN PUB3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LT79|PUB25_ARATH 257 386 + 130 Gaps:28 37.53 421 32.91 6e-09 U-box domain-containing protein 25 OS Arabidopsis thaliana GN PUB25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSA6|PUB29_ARATH 252 328 + 77 none 18.55 415 41.56 2e-07 U-box domain-containing protein 29 OS Arabidopsis thaliana GN PUB29 PE 1 SV 1
rpsblast_cdd gnl|CDD|128780 263 326 + 64 Gaps:1 100.00 63 49.21 1e-11 smart00504 Ubox Modified RING finger domain. Modified RING finger domain without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
rpsblast_cdd gnl|CDD|203049 264 330 + 67 none 91.78 73 43.28 4e-09 pfam04564 U-box U-box domain. This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues.
rpsblast_kog gnl|CDD|39425 461 841 + 381 Gaps:40 69.64 550 20.10 4e-07 KOG4224 KOG4224 KOG4224 Armadillo repeat protein VAC8 required for vacuole fusion inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking secretion and vesicular transport].

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 757 798 42 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 801 841 41 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 714 756 43 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 576 618 43 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 672 712 41 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 407 446 40 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 536 575 40 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SMART 874 914 41 SM00185 none Armadillo/beta-catenin-like repeats IPR000225
SUPERFAMILY 350 519 170 SSF48371 none none IPR016024
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 17 25 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 479 843 365 G3DSA:1.25.10.10 none none IPR011989
Gene3D 317 432 116 G3DSA:1.25.10.10 none none IPR011989
SUPERFAMILY 877 958 82 SSF48371 none none IPR016024
SUPERFAMILY 556 845 290 SSF48371 none none IPR016024
ProSiteProfiles 726 754 29 PS50176 none Armadillo/plakoglobin ARM repeat profile. IPR000225
Pfam 263 328 66 PF04564 "UniPathway:UPA00143" U-box domain IPR003613
PANTHER 672 848 177 PTHR22849 none none none
PANTHER 11 503 493 PTHR22849 none none none
Phobius 26 1015 990 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 196 217 22 Coil none none none
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 262 316 55 G3DSA:3.30.40.10 none none IPR013083
SMART 263 326 64 SM00504 "UniPathway:UPA00143" Modified RING finger domain IPR003613
PANTHER 672 848 177 PTHR22849:SF4 none none none
PANTHER 897 1005 109 PTHR22849:SF4 none none none
ProSiteProfiles 259 333 75 PS51698 "UniPathway:UPA00143" U-box domain profile. IPR003613
PANTHER 897 1005 109 PTHR22849 none none none
SUPERFAMILY 245 330 86 SSF57850 none none none
Coils 61 89 29 Coil none none none

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 4 0.689 0.041 NON-PLANT 25