Protein : Qrob_P0035840.2 Q. robur
Protein Identifier  ? Qrob_P0035840.2 Organism . Name  Quercus robur
Protein Description  (M=3) PTHR31734:SF5 - AUXIN-RESPONSIVE PROTEIN IAA27 (PTHR31734:SF5) Alias (in v1)  Qrob_P0408270.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 239  
Kegg Orthology  K14484
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103323939 3 238 + 236 Gaps:17 97.98 248 84.36 4e-139 auxin-responsive protein IAA14
blastp_kegg lcl|pper:PRUPE_ppa010698mg 7 238 + 232 Gaps:17 100.00 239 84.94 3e-138 hypothetical protein
blastp_kegg lcl|tcc:TCM_020774 1 238 + 238 Gaps:16 100.00 254 84.65 1e-134 Indole-3-acetic acid 7 isoform 1
blastp_kegg lcl|pop:POPTR_0008s16110g 8 238 + 231 Gaps:21 99.19 248 81.30 2e-134 POPTRDRAFT_720961 aux/IAA family protein
blastp_kegg lcl|pxb:103929782 7 238 + 232 Gaps:18 100.00 244 80.74 1e-133 auxin-responsive protein IAA14-like
blastp_kegg lcl|mdm:103453285 7 238 + 232 Gaps:18 100.00 244 80.74 5e-133 IAA5 auxin-responsive protein IAA14-like
blastp_kegg lcl|mdm:103425705 7 238 + 232 Gaps:20 100.00 244 81.97 7e-131 auxin-responsive protein IAA14-like
blastp_kegg lcl|vvi:100254530 1 237 + 237 Gaps:19 99.59 243 83.47 3e-130 auxin-responsive protein IAA14-like
blastp_kegg lcl|fve:101295272 10 238 + 229 Gaps:17 99.16 238 80.08 1e-126 auxin-responsive protein IAA14-like
blastp_kegg lcl|pop:POPTR_0010s08880g 10 238 + 229 Gaps:51 98.19 277 73.16 5e-126 POPTRDRAFT_566151 aux/IAA family protein
blastp_uniprot_sprot sp|Q38832|IAA14_ARATH 17 238 + 222 Gaps:16 100.00 228 75.44 2e-112 Auxin-responsive protein IAA14 OS Arabidopsis thaliana GN IAA14 PE 1 SV 2
blastp_uniprot_sprot sp|Q38825|IAA7_ARATH 17 238 + 222 Gaps:24 97.94 243 73.11 9e-112 Auxin-responsive protein IAA7 OS Arabidopsis thaliana GN IAA7 PE 1 SV 1
blastp_uniprot_sprot sp|O24407|IAA16_ARATH 17 238 + 222 Gaps:25 99.58 236 66.81 1e-101 Auxin-responsive protein IAA16 OS Arabidopsis thaliana GN IAA16 PE 1 SV 1
blastp_uniprot_sprot sp|P93830|IAA17_ARATH 16 238 + 223 Gaps:27 97.82 229 71.88 6e-101 Auxin-responsive protein IAA17 OS Arabidopsis thaliana GN IAA17 PE 1 SV 2
blastp_uniprot_sprot sp|P13089|AUX28_SOYBN 17 238 + 222 Gaps:41 100.00 243 69.14 3e-100 Auxin-induced protein AUX28 OS Glycine max GN AUX28 PE 2 SV 1
blastp_uniprot_sprot sp|P0C132|IAA30_ORYSJ 16 238 + 223 Gaps:61 98.92 277 56.20 4e-84 Auxin-responsive protein IAA30 OS Oryza sativa subsp. japonica GN IAA30 PE 2 SV 1
blastp_uniprot_sprot sp|Q75GK0|IAA11_ORYSJ 17 236 + 220 Gaps:58 98.71 233 58.26 7e-76 Auxin-responsive protein IAA11 OS Oryza sativa subsp. japonica GN IAA11 PE 2 SV 1
blastp_uniprot_sprot sp|Q38826|IAA8_ARATH 4 237 + 234 Gaps:58 88.47 321 47.54 3e-68 Auxin-responsive protein IAA8 OS Arabidopsis thaliana GN IAA8 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZSY8|IAA27_ARATH 17 237 + 221 Gaps:80 87.54 305 49.06 7e-68 Auxin-responsive protein IAA27 OS Arabidopsis thaliana GN IAA27 PE 1 SV 1
blastp_uniprot_sprot sp|Q38827|IAA9_ARATH 17 238 + 222 Gaps:56 82.25 338 46.04 6e-65 Auxin-responsive protein IAA9 OS Arabidopsis thaliana GN IAA9 PE 1 SV 1
rpsblast_cdd gnl|CDD|202200 17 230 + 214 Gaps:26 100.00 188 69.68 3e-84 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 120 220 101 PS51745 none PB1 domain profile. IPR000270
PANTHER 14 237 224 PTHR31734:SF5 none none none
SUPERFAMILY 116 219 104 SSF54277 none none none
PANTHER 14 237 224 PTHR31734 none none none
Pfam 17 230 214 PF02309 none AUX/IAA family IPR003311

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting