Protein : Qrob_P0035680.2 Q. robur
Protein Identifier  ? Qrob_P0035680.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11141//PTHR11141:SF4 - PROTEIN TRANSPORT PROTEIN SEC23 // SUBFAMILY NOT NAMED (PTHR11141:SF4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 781  
Kegg Orthology  K14006
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0030127 COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100249428 1 780 + 780 Gaps:17 100.00 793 80.08 0.0 protein transport protein sec23-like
blastp_kegg lcl|pmum:103323936 1 780 + 780 Gaps:2 100.00 782 79.80 0.0 protein transport protein SEC23
blastp_kegg lcl|pper:PRUPE_ppa001670mg 1 780 + 780 Gaps:2 100.00 782 79.54 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s08860g 1 780 + 780 Gaps:35 100.00 753 82.20 0.0 POPTRDRAFT_1090137 transport family protein
blastp_kegg lcl|pxb:103962901 1 780 + 780 Gaps:7 100.00 783 80.08 0.0 protein transport protein SEC23-like
blastp_kegg lcl|fve:101296926 1 779 + 779 Gaps:6 99.87 782 79.77 0.0 protein transport protein SEC23-like
blastp_kegg lcl|tcc:TCM_020779 1 780 + 780 Gaps:10 100.00 772 79.66 0.0 Sec23/Sec24 protein transport family protein isoform 1
blastp_kegg lcl|pop:POPTR_0008s16120g 1 780 + 780 Gaps:35 100.00 753 80.61 0.0 POPTRDRAFT_1085452 hypothetical protein
blastp_kegg lcl|mdm:103450973 1 780 + 780 Gaps:7 100.00 783 78.93 0.0 protein transport protein SEC23-like
blastp_kegg lcl|pxb:103928339 1 779 + 779 Gaps:8 99.87 782 79.77 0.0 protein transport protein SEC23-like
blastp_pdb 3egx_A 1 778 + 778 Gaps:51 99.08 764 46.63 0.0 mol:protein length:764 Protein transport protein Sec23A
blastp_pdb 3egd_A 1 778 + 778 Gaps:51 99.08 764 46.63 0.0 mol:protein length:764 Protein transport protein Sec23A
blastp_pdb 3eg9_A 1 778 + 778 Gaps:51 99.08 764 46.63 0.0 mol:protein length:764 Protein transport protein Sec23A
blastp_pdb 2nut_A 1 778 + 778 Gaps:51 98.44 769 46.63 0.0 mol:protein length:769 Protein transport protein Sec23A
blastp_pdb 2nup_A 1 778 + 778 Gaps:51 98.44 769 46.63 0.0 mol:protein length:769 Protein transport protein Sec23A
blastp_pdb 3efo_A 1 778 + 778 Gaps:51 98.95 765 46.63 0.0 mol:protein length:765 Protein transport protein Sec23A
blastp_pdb 1m2v_A 1 780 + 780 Gaps:62 99.74 768 41.78 0.0 mol:protein length:768 protein transport protein SEC23
blastp_pdb 1m2o_C 1 780 + 780 Gaps:62 99.74 768 41.78 0.0 mol:protein length:768 protein transport protein SEC23
blastp_pdb 1m2o_A 1 780 + 780 Gaps:62 99.74 768 41.78 0.0 mol:protein length:768 protein transport protein SEC23
blastp_pdb 2qtv_A 2 780 + 779 Gaps:62 99.09 772 41.70 0.0 mol:protein length:772 Protein transport protein SEC23
blastp_uniprot_sprot sp|Q4PE39|SEC23_USTMA 1 778 + 778 Gaps:62 99.35 773 45.96 0.0 Protein transport protein SEC23 OS Ustilago maydis (strain 521 / FGSC 9021) GN SEC23 PE 3 SV 1
blastp_uniprot_sprot sp|Q15436|SC23A_HUMAN 1 778 + 778 Gaps:51 98.95 765 46.63 0.0 Protein transport protein Sec23A OS Homo sapiens GN SEC23A PE 1 SV 2
blastp_uniprot_sprot sp|Q05AS9|SC23A_XENTR 1 778 + 778 Gaps:51 98.95 765 45.84 0.0 Protein transport protein Sec23A OS Xenopus tropicalis GN sec23a PE 2 SV 1
blastp_uniprot_sprot sp|Q5R9P3|SC23A_PONAB 1 778 + 778 Gaps:51 98.95 765 46.50 0.0 Protein transport protein Sec23A OS Pongo abelii GN SEC23A PE 2 SV 1
blastp_uniprot_sprot sp|Q7SZE5|SC23A_DANRE 2 778 + 777 Gaps:51 98.82 765 46.03 0.0 Protein transport protein Sec23A OS Danio rerio GN sec23a PE 2 SV 1
blastp_uniprot_sprot sp|Q01405|SC23A_MOUSE 1 778 + 778 Gaps:51 98.95 765 46.24 0.0 Protein transport protein Sec23A OS Mus musculus GN Sec23a PE 1 SV 2
blastp_uniprot_sprot sp|A2VDL8|SC23A_BOVIN 1 774 + 774 Gaps:51 98.05 768 46.35 0.0 Protein transport protein Sec23A OS Bos taurus GN SEC23A PE 2 SV 1
blastp_uniprot_sprot sp|Q9D662|SC23B_MOUSE 1 778 + 778 Gaps:53 98.96 767 46.51 0.0 Protein transport protein Sec23B OS Mus musculus GN Sec23b PE 2 SV 1
blastp_uniprot_sprot sp|Q3SZN2|SC23B_BOVIN 1 778 + 778 Gaps:53 98.96 767 46.25 0.0 Protein transport protein Sec23B OS Bos taurus GN SEC23B PE 2 SV 1
blastp_uniprot_sprot sp|Q15437|SC23B_HUMAN 1 778 + 778 Gaps:53 98.96 767 46.11 0.0 Protein transport protein Sec23B OS Homo sapiens GN SEC23B PE 1 SV 2

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 426 526 101 PF08033 "Reactome:REACT_11123" Sec23/Sec24 beta-sandwich domain IPR012990
Pfam 52 91 40 PF04810 "Reactome:REACT_11123" Sec23/Sec24 zinc finger IPR006895
SUPERFAMILY 641 779 139 SSF82754 none none none
Pfam 652 738 87 PF00626 none Gelsolin repeat IPR007123
PANTHER 1 121 121 PTHR11141 none none none
PANTHER 155 780 626 PTHR11141 none none none
Gene3D 640 756 117 G3DSA:3.40.20.10 none none IPR029006
Gene3D 158 421 264 G3DSA:3.40.50.410 none none IPR002035
Gene3D 1 102 102 G3DSA:2.60.40.1670 none none none
Gene3D 422 526 105 G3DSA:2.60.40.1670 none none none
Pfam 539 639 101 PF04815 "Reactome:REACT_11123" Sec23/Sec24 helical domain IPR006900
SUPERFAMILY 433 537 105 SSF81995 none none none
SUPERFAMILY 2 61 60 SSF81995 none none none
SUPERFAMILY 538 640 103 SSF81811 "Reactome:REACT_11123" none IPR006900
Pfam 158 411 254 PF04811 "Reactome:REACT_11123" Sec23/Sec24 trunk domain IPR006896
PANTHER 1 121 121 PTHR11141:SF4 none none none
PANTHER 155 780 626 PTHR11141:SF4 none none none
SUPERFAMILY 46 113 68 SSF82919 "Reactome:REACT_11123" none IPR006895
SUPERFAMILY 158 416 259 SSF53300 none none IPR002035

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting