Protein : Qrob_P0035600.2 Q. robur
Protein Identifier  ? Qrob_P0035600.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) PTHR31563:SF2 - ION CHANNEL POLLUX-LIKE 1-RELATED (PTHR31563:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 806  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001330mg 1 805 + 805 Gaps:10 94.14 853 78.58 0.0 hypothetical protein
blastp_kegg lcl|pxb:103929777 1 805 + 805 Gaps:2 93.48 859 77.46 0.0 putative ion channel POLLUX-like 2
blastp_kegg lcl|pmum:103323944 2 805 + 804 Gaps:5 94.00 850 77.97 0.0 putative ion channel POLLUX-like 2
blastp_kegg lcl|mdm:103403971 6 805 + 800 Gaps:2 93.77 851 77.32 0.0 putative ion channel POLLUX-like 2
blastp_kegg lcl|tcc:TCM_020766 1 803 + 803 Gaps:49 81.47 1031 74.17 0.0 Uncharacterized protein isoform 1
blastp_kegg lcl|cit:102611535 2 805 + 804 Gaps:1 93.59 858 76.46 0.0 putative ion channel POLLUX-like 2-like
blastp_kegg lcl|cic:CICLE_v10004298mg 2 805 + 804 Gaps:1 93.59 858 76.34 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s16060g 1 805 + 805 Gaps:3 94.02 853 75.19 0.0 POPTRDRAFT_564910 hypothetical protein
blastp_kegg lcl|gmx:100785453 2 805 + 804 Gaps:6 94.13 852 75.19 0.0 putative ion channel POLLUX-like 2-like
blastp_kegg lcl|fve:101312681 13 805 + 793 Gaps:8 93.80 839 76.62 0.0 putative ion channel POLLUX-like 2-like
blastp_uniprot_sprot sp|Q940Y9|POLL2_ARATH 6 805 + 800 Gaps:38 94.00 817 69.92 0.0 Putative ion channel POLLUX-like 2 OS Arabidopsis thaliana GN At5g43745 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZM7|POLL1_ARATH 30 805 + 776 Gaps:33 91.64 813 67.25 0.0 Putative ion channel POLLUX-like 1 OS Arabidopsis thaliana GN At5g02940 PE 2 SV 1
blastp_uniprot_sprot sp|Q5H8A6|CASTO_LOTJA 154 798 + 645 Gaps:106 72.33 853 28.85 6e-56 Ion channel CASTOR OS Lotus japonicus GN CASTOR PE 1 SV 1
blastp_uniprot_sprot sp|Q75LD5|CASTO_ORYSJ 170 798 + 629 Gaps:123 67.64 893 28.97 6e-54 Probable ion channel CASTOR OS Oryza sativa subsp. japonica GN Os03g0843600 PE 2 SV 1
blastp_uniprot_sprot sp|Q5N941|POLLU_ORYSJ 157 796 + 640 Gaps:98 63.42 965 27.45 2e-50 Probable ion channel POLLUX OS Oryza sativa subsp. japonica GN Os01g0870100 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LTX4|POLLU_ARATH 154 795 + 642 Gaps:102 74.51 824 26.55 2e-49 Probable ion channel POLLUX OS Arabidopsis thaliana GN At5g49960 PE 2 SV 1
blastp_uniprot_sprot sp|Q6RHR6|DMI1_MEDTR 132 798 + 667 Gaps:95 73.92 882 26.69 5e-49 Ion channel DMI1 OS Medicago truncatula GN DMI1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4VY51|SYM8_PEA 154 798 + 645 Gaps:83 69.13 894 26.86 5e-48 Probable ion channel SYM8 OS Pisum sativum GN SYM8 PE 1 SV 3
blastp_uniprot_sprot sp|Q5H8A5|POLLU_LOTJA 157 795 + 639 Gaps:111 66.74 917 26.80 3e-46 Ion channel POLLUX OS Lotus japonicus GN POLLUX PE 1 SV 1
rpsblast_cdd gnl|CDD|114933 327 542 + 216 Gaps:8 100.00 208 66.83 4e-75 pfam06241 DUF1012 Protein of unknown function (DUF1012). Family of uncharacterized proteins found in both eukaryotes and bacteria.

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 163 197 35 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 47 64 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 139 162 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 237 380 144 G3DSA:3.40.50.720 none none IPR016040
PANTHER 512 805 294 PTHR31563 none none none
PANTHER 13 477 465 PTHR31563:SF2 none none none
Phobius 1 46 46 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 327 542 216 PF06241 none Protein of unknown function (DUF1012) IPR010420
Phobius 65 83 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 84 102 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 198 216 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 138 36 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 512 805 294 PTHR31563:SF2 none none none
PANTHER 13 477 465 PTHR31563 none none none
Phobius 217 805 589 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 127 265 139 SSF81324 none none none

2 Localization

Analysis Start End Length
TMHMM 139 161 22
TMHMM 198 217 19

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting