Protein : Qrob_P0035370.2 Q. robur
Protein Identifier  ? Qrob_P0035370.2 Organism . Name  Quercus robur
Protein Description  (M=5) PTHR31734:SF3 - AUXIN-RESPONSIVE PROTEIN IAA31 (PTHR31734:SF3) Alias (in v1)  Qrob_P0725070.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 191  
Kegg Orthology  K14484
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101293288 42 190 + 149 Gaps:2 71.23 212 66.23 4e-65 auxin-responsive protein IAA31-like
blastp_kegg lcl|pxb:103950348 42 190 + 149 Gaps:4 74.50 200 67.79 8e-64 auxin-responsive protein IAA31-like
blastp_kegg lcl|pxb:103944796 28 190 + 163 Gaps:5 80.00 200 63.12 1e-63 auxin-responsive protein IAA31
blastp_kegg lcl|pmum:103322207 36 190 + 155 Gaps:5 77.95 195 67.11 3e-61 auxin-responsive protein IAA31
blastp_kegg lcl|pper:PRUPE_ppa011821mg 36 190 + 155 Gaps:4 77.84 194 67.55 6e-59 hypothetical protein
blastp_kegg lcl|vvi:100244346 39 190 + 152 Gaps:15 78.28 198 63.87 1e-57 auxin-responsive protein IAA31-like
blastp_kegg lcl|pvu:PHAVU_003G124600g 42 190 + 149 Gaps:3 77.08 192 64.86 2e-55 hypothetical protein
blastp_kegg lcl|mus:103995908 30 190 + 161 Gaps:4 89.20 176 54.78 6e-53 auxin-responsive protein IAA4-like isoform X1
blastp_kegg lcl|vvi:100241721 44 189 + 146 Gaps:5 81.71 175 62.94 1e-52 auxin-responsive protein IAA4-like
blastp_kegg lcl|pda:103714723 24 190 + 167 Gaps:14 89.33 178 58.49 4e-52 auxin-responsive protein IAA4
blastp_uniprot_sprot sp|Q8H174|IAA31_ARATH 64 189 + 126 Gaps:7 77.85 158 56.10 3e-41 Auxin-responsive protein IAA31 OS Arabidopsis thaliana GN IAA31 PE 2 SV 2
blastp_uniprot_sprot sp|Q6Z5M0|IAA8_ORYSJ 1 188 + 188 Gaps:19 95.12 205 42.56 6e-36 Auxin-responsive protein IAA8 OS Oryza sativa subsp. japonica GN IAA8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M1R4|IAA30_ARATH 34 187 + 154 Gaps:24 87.21 172 47.33 9e-35 Auxin-responsive protein IAA30 OS Arabidopsis thaliana GN IAA30 PE 2 SV 1
blastp_uniprot_sprot sp|O24410|IAA20_ARATH 34 188 + 155 Gaps:10 87.43 175 43.79 3e-34 Auxin-responsive protein IAA20 OS Arabidopsis thaliana GN IAA20 PE 2 SV 2
blastp_uniprot_sprot sp|A2ZRY8|IAA4_ORYSJ 37 190 + 154 Gaps:26 86.70 203 47.73 1e-30 Auxin-responsive protein IAA4 OS Oryza sativa subsp. japonica GN IAA4 PE 2 SV 1
blastp_uniprot_sprot sp|A2WNM0|IAA4_ORYSI 37 190 + 154 Gaps:26 86.70 203 47.73 1e-30 Auxin-responsive protein IAA4 OS Oryza sativa subsp. indica GN IAA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q75GB1|IAA17_ORYSJ 76 187 + 112 Gaps:10 47.47 257 41.80 1e-23 Auxin-responsive protein IAA17 OS Oryza sativa subsp. japonica GN IAA17 PE 2 SV 1
blastp_uniprot_sprot sp|Q38829|IAA11_ARATH 71 186 + 116 Gaps:38 60.98 246 38.00 1e-23 Auxin-responsive protein IAA11 OS Arabidopsis thaliana GN IAA11 PE 1 SV 1
blastp_uniprot_sprot sp|Q5VRR0|IAA20_ORYSJ 72 184 + 113 Gaps:7 57.92 183 48.11 2e-22 Auxin-responsive protein IAA20 OS Oryza sativa subsp. japonica GN IAA20 PE 2 SV 1
blastp_uniprot_sprot sp|O24543|AX22E_VIGRR 71 187 + 117 Gaps:1 58.13 203 35.59 4e-22 Auxin-induced protein 22E OS Vigna radiata var. radiata GN AUX22E PE 2 SV 1
rpsblast_cdd gnl|CDD|202200 55 186 + 132 Gaps:9 66.49 188 38.40 1e-27 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 188 180 PTHR31734 none none none
PANTHER 9 188 180 PTHR31734:SF3 none none none
Pfam 67 187 121 PF02309 none AUX/IAA family IPR003311
SUPERFAMILY 99 184 86 SSF54277 none none none
ProSiteProfiles 100 189 90 PS51745 none PB1 domain profile. IPR000270

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting