Protein : Qrob_P0035360.2 Q. robur
Protein Identifier  ? Qrob_P0035360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K11648 - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 225  
Kegg Orthology  K11648
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000228 nuclear chromosome A chromosome found in the nucleus of a eukaryotic cell.
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102630390 1 224 + 224 Gaps:16 100.00 240 78.75 2e-131 chromatin structure-remodeling complex protein BSH-like
blastp_kegg lcl|csv:101206466 1 224 + 224 Gaps:16 100.00 240 77.50 4e-131 chromatin structure-remodeling complex protein BSH-like
blastp_kegg lcl|cmo:103483932 1 224 + 224 Gaps:16 100.00 240 77.50 1e-130 chromatin structure-remodeling complex protein BSH
blastp_kegg lcl|vvi:100249448 1 224 + 224 Gaps:16 98.77 243 77.08 3e-129 chromatin structure-remodeling complex protein BSH-like
blastp_kegg lcl|gmx:100818624 1 224 + 224 Gaps:16 100.00 240 76.25 1e-127 SNF5 chromatin structure-remodeling complex protein BSH-like
blastp_kegg lcl|cic:CICLE_v10005749mg 1 224 + 224 Gaps:20 100.00 236 78.81 5e-127 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10021423mg 1 224 + 224 Gaps:16 100.00 240 73.33 1e-126 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_003G124500g 1 224 + 224 Gaps:16 100.00 240 75.00 2e-126 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10014510mg 1 224 + 224 Gaps:16 100.00 240 73.75 7e-126 hypothetical protein
blastp_kegg lcl|cam:101505711 1 224 + 224 Gaps:16 97.17 247 74.58 3e-125 chromatin structure-remodeling complex protein BSH-like
blastp_uniprot_sprot sp|P93045|BSH_ARATH 1 224 + 224 Gaps:16 100.00 240 71.25 2e-124 Chromatin structure-remodeling complex protein BSH OS Arabidopsis thaliana GN BSH PE 1 SV 2
blastp_uniprot_sprot sp|Q6DFM1|SNF5_XENTR 23 224 + 202 Gaps:48 49.74 378 34.57 3e-16 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Xenopus tropicalis GN smarcb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6GQ82|SNF5_XENLA 23 224 + 202 Gaps:48 49.74 378 34.57 4e-16 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Xenopus laevis GN smarcb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5U379|SNF5_DANRE 23 224 + 202 Gaps:48 50.40 373 34.04 9e-16 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS Danio rerio GN smarcb1a PE 2 SV 1
blastp_uniprot_sprot sp|Q5BIN2|SNF5_BOVIN 23 224 + 202 Gaps:48 48.83 385 33.51 3e-15 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Bos taurus GN SMARCB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZK40|SNF5_CHICK 23 224 + 202 Gaps:48 48.70 386 33.51 3e-15 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Gallus gallus GN SMARCB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Z0H3|SNF5_MOUSE 23 224 + 202 Gaps:48 48.83 385 33.51 3e-15 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Mus musculus GN Smarcb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q12824|SNF5_HUMAN 23 224 + 202 Gaps:48 48.83 385 33.51 3e-15 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Homo sapiens GN SMARCB1 PE 1 SV 2
blastp_uniprot_sprot sp|O42467|SNF5_TETFL 23 141 + 119 Gaps:19 35.92 373 35.82 8e-14 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS Tetraodon fluviatilis GN smarcb1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9USM3|SFH1_SCHPO 24 144 + 121 Gaps:19 33.01 418 33.33 4e-10 Chromatin structure-remodeling complex subunit sfh1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sfh1 PE 1 SV 1
rpsblast_cdd gnl|CDD|203107 23 224 + 202 Gaps:46 96.49 228 30.91 1e-25 pfam04855 SNF5 SNF5 / SMARCB1 / INI1. SNF5 is a component of the yeast SWI/SNF complex which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterized so far. This family consists of the conserved region of SNF5 including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex. SNF5 is also known as SMARCB1 for SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily b member 1 and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs).
rpsblast_kog gnl|CDD|36862 8 221 + 214 Gaps:24 59.45 397 36.02 4e-55 KOG1649 KOG1649 KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit [Chromatin structure and dynamics Transcription].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 21 87 67 PF04855 none SNF5 / SMARCB1 / INI1 IPR006939
Pfam 103 224 122 PF04855 none SNF5 / SMARCB1 / INI1 IPR006939
PANTHER 14 224 211 PTHR10019 none none IPR006939

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 59   Mitochondrion 5 0.170 0.400 NON-PLANT 59