Protein : Qrob_P0034030.2 Q. robur
Protein Identifier  ? Qrob_P0034030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) K04077 - chaperonin GroEL Gene Prediction Quality  validated
Protein length 

Sequence

Length: 316  
Kegg Orthology  K04077
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003093mg 7 278 + 272 Gaps:36 50.58 605 76.80 1e-72 hypothetical protein
blastp_kegg lcl|gmx:100777674 7 278 + 272 Gaps:36 51.69 592 73.86 1e-71 ruBisCO large subunit-binding protein subunit beta chloroplastic-like
blastp_kegg lcl|pmum:103321762 7 278 + 272 Gaps:36 50.58 605 75.82 1e-71 ruBisCO large subunit-binding protein subunit beta chloroplastic
blastp_kegg lcl|vvi:100263832 7 278 + 272 Gaps:36 50.33 608 74.84 1e-71 ruBisCO large subunit-binding protein subunit beta chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_005G051700g 9 278 + 270 Gaps:36 51.26 593 75.00 2e-71 hypothetical protein
blastp_kegg lcl|pxb:103964787 7 278 + 272 Gaps:36 50.58 605 75.82 2e-71 chaperonin 60 subunit beta 2 chloroplastic
blastp_kegg lcl|mdm:103414744 7 278 + 272 Gaps:36 50.66 604 75.82 2e-71 chaperonin 60 subunit beta 2 chloroplastic
blastp_kegg lcl|gmx:100819369 7 278 + 272 Gaps:36 51.78 591 73.53 8e-71 ruBisCO large subunit-binding protein subunit beta chloroplastic-like
blastp_kegg lcl|pxb:103931439 7 278 + 272 Gaps:36 50.41 607 75.49 2e-70 ruBisCO large subunit-binding protein subunit beta chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0342910 7 278 + 272 Gaps:36 50.58 605 75.16 3e-70 rubisco subunit binding-protein beta subunit rubb putative
blastp_pdb 1wf4_n 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_m 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_l 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_k 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_j 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_i 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_h 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_g 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_f 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_pdb 1wf4_e 13 281 + 269 Gaps:40 55.43 543 48.84 3e-30 mol:protein length:543 Cpn60(GroEL)
blastp_uniprot_sprot sp|P08927|RUBB_PEA 9 278 + 270 Gaps:36 51.09 595 74.34 8e-71 RuBisCO large subunit-binding protein subunit beta chloroplastic OS Pisum sativum PE 1 SV 2
blastp_uniprot_sprot sp|P21240|CPNB1_ARATH 6 278 + 273 Gaps:37 51.00 600 71.90 2e-67 Chaperonin 60 subunit beta 1 chloroplastic OS Arabidopsis thaliana GN CPN60B1 PE 1 SV 3
blastp_uniprot_sprot sp|P21241|RUBB_BRANA 6 278 + 273 Gaps:36 52.21 588 71.01 5e-67 RuBisCO large subunit-binding protein subunit beta chloroplastic OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|C0Z361|CPNB3_ARATH 8 278 + 271 Gaps:37 50.92 597 71.71 1e-66 Chaperonin 60 subunit beta 3 chloroplastic OS Arabidopsis thaliana GN CPN60B3 PE 1 SV 1
blastp_uniprot_sprot sp|Q43831|RUBB_SECCE 60 278 + 219 Gaps:36 50.70 499 67.19 6e-66 RuBisCO large subunit-binding protein subunit beta chloroplastic (Fragment) OS Secale cereale GN CPN60 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJE4|CPNB2_ARATH 6 278 + 273 Gaps:36 51.51 596 70.68 2e-65 Chaperonin 60 subunit beta 2 chloroplastic OS Arabidopsis thaliana GN CPN60B2 PE 1 SV 1
blastp_uniprot_sprot sp|Q42695|RUBC_CHLRE 110 278 + 169 Gaps:36 78.38 259 51.72 1e-56 RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS Chlamydomonas reinhardtii PE 1 SV 1
blastp_uniprot_sprot sp|Q9C667|CPNB4_ARATH 9 278 + 270 Gaps:49 58.10 611 50.14 2e-49 Chaperonin 60 subunit beta 4 chloroplastic OS Arabidopsis thaliana GN CPN60B4 PE 1 SV 1
blastp_uniprot_sprot sp|Q42693|RUBB_CHLRE 110 278 + 169 Gaps:36 46.67 435 46.31 2e-43 RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS Chlamydomonas reinhardtii PE 1 SV 1
blastp_uniprot_sprot sp|Q119S1|CH601_TRIEI 13 272 + 260 Gaps:38 52.05 561 51.03 5e-39 60 kDa chaperonin 1 OS Trichodesmium erythraeum (strain IMS101) GN groL1 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 170 271 102 G3DSA:1.10.560.10 none none IPR027413
Gene3D 15 108 94 G3DSA:1.10.560.10 none none IPR027413
SUPERFAMILY 110 175 66 SSF52029 none none IPR027409
Coils 194 215 22 Coil none none none
SUPERFAMILY 25 125 101 SSF48592 none none none
SUPERFAMILY 179 272 94 SSF48592 none none none
Pfam 119 271 153 PF00118 none TCP-1/cpn60 chaperonin family IPR002423
Pfam 36 107 72 PF00118 none TCP-1/cpn60 chaperonin family IPR002423
PRINTS 60 78 19 PR00304 none Tailless complex polypeptide 1 (chaperone) signature IPR017998
PRINTS 38 54 17 PR00304 none Tailless complex polypeptide 1 (chaperone) signature IPR017998
PRINTS 94 113 20 PR00304 none Tailless complex polypeptide 1 (chaperone) signature IPR017998
Gene3D 109 169 61 G3DSA:3.50.7.10 none none IPR027409
PANTHER 14 272 259 PTHR11353:SF8 none none none
ProSitePatterns 180 191 12 PS00296 none Chaperonins cpn60 signature. IPR018370
PANTHER 14 272 259 PTHR11353 none none IPR002423

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting