Protein : Qrob_P0033690.2 Q. robur
Protein Identifier  ? Qrob_P0033690.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10792:SF8 - RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED (PTHR10792:SF8) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 168  
Kegg Orthology  K02896
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s15070g 1 167 + 167 Gaps:1 100.00 168 83.33 3e-96 POPTRDRAFT_721469 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s19930g 1 167 + 167 Gaps:1 100.00 168 83.33 4e-96 60S ribosomal protein L24
blastp_kegg lcl|vvi:100263161 1 167 + 167 Gaps:1 100.00 168 82.74 5e-96 probable ribosome biogenesis protein RLP24-like
blastp_kegg lcl|vvi:100250021 1 167 + 167 Gaps:1 100.00 168 82.14 6e-96 probable ribosome biogenesis protein RLP24-like
blastp_kegg lcl|cit:102610147 1 167 + 167 none 100.00 167 81.44 3e-95 probable ribosome biogenesis protein RLP24-like
blastp_kegg lcl|gmx:100793564 1 167 + 167 Gaps:1 100.00 168 80.36 3e-94 probable ribosome biogenesis protein RLP24-like
blastp_kegg lcl|pmum:103342976 1 159 + 159 Gaps:1 94.05 168 86.71 2e-93 probable ribosome biogenesis protein RLP24
blastp_kegg lcl|pper:PRUPE_ppa012472mg 1 159 + 159 Gaps:1 94.05 168 86.71 2e-93 hypothetical protein
blastp_kegg lcl|gmx:100799024 1 167 + 167 Gaps:2 100.00 169 79.88 7e-93 probable ribosome biogenesis protein RLP24-like
blastp_kegg lcl|pper:PRUPE_ppa012488mg 1 159 + 159 Gaps:1 94.61 167 86.71 8e-93 hypothetical protein
blastp_pdb 2zkr_u 1 93 + 93 Gaps:5 57.32 157 41.11 1e-17 mol:protein length:157 60S Ribosomal protein L24
blastp_pdb 3izr_Z 1 94 + 94 Gaps:2 56.79 162 35.87 1e-15 mol:protein length:162 60S ribosomal protein L24 (L24e)
blastp_pdb 3u5i_W 1 94 + 94 Gaps:5 58.71 155 41.76 2e-15 mol:protein length:155 60S ribosomal protein L24-A
blastp_pdb 3u5e_W 1 94 + 94 Gaps:5 58.71 155 41.76 2e-15 mol:protein length:155 60S ribosomal protein L24-A
blastp_pdb 3o5h_V 1 94 + 94 Gaps:5 58.71 155 41.76 2e-15 mol:protein length:155 60S ribosomal protein L24-A
blastp_pdb 3o58_V 1 94 + 94 Gaps:5 58.71 155 41.76 2e-15 mol:protein length:155 60S ribosomal protein L24-A
blastp_pdb 3izs_Z 1 94 + 94 Gaps:5 58.71 155 41.76 2e-15 mol:protein length:155 60S ribosomal protein rpL24 (L24e)
blastp_pdb 2x7n_D 1 56 + 56 none 100.00 56 46.43 4e-12 mol:protein length:56 60S RIBOSOMAL PROTEIN L24-A
blastp_pdb 1s1i_S 1 56 + 56 none 100.00 56 46.43 4e-12 mol:protein length:56 60S ribosomal protein L24-A
blastp_pdb 4adx_U 2 61 + 60 none 89.55 67 35.00 3e-09 mol:protein length:67 RPL24E
blastp_uniprot_sprot sp|O22165|RLP24_ARATH 1 167 + 167 Gaps:10 100.00 159 72.33 1e-78 Probable ribosome biogenesis protein RLP24 OS Arabidopsis thaliana GN At2g44860 PE 2 SV 1
blastp_uniprot_sprot sp|Q86B05|RLP24_DICDI 1 140 + 140 none 85.37 164 58.57 1e-58 Probable ribosome biogenesis protein RLP24 OS Dictyostelium discoideum GN rlp24 PE 2 SV 1
blastp_uniprot_sprot sp|Q3SZ12|RLP24_BOVIN 1 137 + 137 none 84.05 163 55.47 1e-52 Probable ribosome biogenesis protein RLP24 OS Bos taurus GN RSL24D1 PE 2 SV 1
blastp_uniprot_sprot sp|Q99L28|RLP24_MOUSE 1 137 + 137 none 84.05 163 54.74 2e-52 Probable ribosome biogenesis protein RLP24 OS Mus musculus GN Rsl24d1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P6G7|RLP24_RAT 1 137 + 137 none 84.05 163 54.74 2e-52 Probable ribosome biogenesis protein RLP24 OS Rattus norvegicus GN Rsl24d1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UHA3|RLP24_HUMAN 1 137 + 137 none 84.05 163 54.74 3e-52 Probable ribosome biogenesis protein RLP24 OS Homo sapiens GN RSL24D1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RF04|RLP24_PONAB 1 137 + 137 none 84.05 163 54.01 1e-51 Probable ribosome biogenesis protein RLP24 OS Pongo abelii GN RSL24D1 PE 2 SV 1
blastp_uniprot_sprot sp|Q10353|RLP24_SCHPO 1 151 + 151 Gaps:1 79.17 192 51.97 6e-51 Ribosome biogenesis protein rlp24 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rlp24 PE 3 SV 1
blastp_uniprot_sprot sp|Q7ZTZ2|RLP24_DANRE 1 137 + 137 Gaps:2 85.09 161 54.01 1e-49 Probable ribosome biogenesis protein RLP24 OS Danio rerio GN rsl24d1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6CF69|RLP24_YARLI 1 142 + 142 Gaps:8 72.34 188 55.88 3e-46 Ribosome biogenesis protein RLP24 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN RLP24 PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 56 53 SSF57716 none none none
ProSitePatterns 8 25 18 PS01073 none Ribosomal protein L24e signature. IPR023442
Gene3D 1 66 66 G3DSA:2.30.170.20 none none IPR023441
PANTHER 2 144 143 PTHR10792:SF8 none none IPR024546
SMART 6 44 39 SM00746 none metallochaperone-like domain IPR011017
PANTHER 2 144 143 PTHR10792 none none IPR000988
Pfam 1 67 67 PF01246 none Ribosomal protein L24e IPR000988

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting