Protein : Qrob_P0033510.2 Q. robur
Protein Identifier  ? Qrob_P0033510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12614 - ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 549  
Kegg Orthology  K12614
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1614640 7 495 + 489 Gaps:17 93.10 507 93.64 0.0 dead box ATP-dependent RNA helicase putative
blastp_kegg lcl|fve:101307921 3 495 + 493 Gaps:21 94.90 510 93.39 0.0 DEAD-box ATP-dependent RNA helicase 8-like
blastp_kegg lcl|cic:CICLE_v10019858mg 4 495 + 492 Gaps:28 94.74 494 92.95 0.0 hypothetical protein
blastp_kegg lcl|cit:102614788 4 495 + 492 Gaps:28 94.74 494 92.95 0.0 DEAD-box ATP-dependent RNA helicase 8-like
blastp_kegg lcl|pxb:103932326 4 495 + 492 Gaps:16 94.90 510 93.18 0.0 DEAD-box ATP-dependent RNA helicase 8
blastp_kegg lcl|pmum:103331888 4 495 + 492 Gaps:27 94.79 499 93.45 0.0 DEAD-box ATP-dependent RNA helicase 8
blastp_kegg lcl|pper:PRUPE_ppa004633mg 4 495 + 492 Gaps:27 94.79 499 93.45 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s07690g 3 495 + 493 Gaps:14 94.85 505 91.86 0.0 POPTRDRAFT_731050 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s15890g 3 495 + 493 Gaps:20 94.79 499 91.54 0.0 POPTRDRAFT_755273 DEAD/DEAH box helicase family protein
blastp_kegg lcl|csv:101203201 5 495 + 491 Gaps:29 94.72 492 92.49 0.0 DEAD-box ATP-dependent RNA helicase 8-like
blastp_pdb 1s2m_A 132 495 + 364 none 91.00 400 72.53 0.0 mol:protein length:400 Putative ATP-dependent RNA helicase DHH1
blastp_pdb 2way_C 342 495 + 154 none 79.79 193 87.01 2e-94 mol:protein length:193 ATP-DEPENDENT RNA HELICASE DDX6
blastp_pdb 2way_A 342 495 + 154 none 79.79 193 87.01 2e-94 mol:protein length:193 ATP-DEPENDENT RNA HELICASE DDX6
blastp_pdb 2wax_C 342 495 + 154 none 79.79 193 87.01 2e-94 mol:protein length:193 ATP-DEPENDENT RNA HELICASE DDX6
blastp_pdb 2wax_A 342 495 + 154 none 79.79 193 87.01 2e-94 mol:protein length:193 ATP-DEPENDENT RNA HELICASE DDX6
blastp_pdb 2xb2_X 139 491 + 353 Gaps:6 85.40 411 39.32 3e-86 mol:protein length:411 EUKARYOTIC INITIATION FACTOR 4A-III
blastp_pdb 2xb2_A 139 491 + 353 Gaps:6 85.40 411 39.32 3e-86 mol:protein length:411 EUKARYOTIC INITIATION FACTOR 4A-III
blastp_pdb 2j0s_A 139 491 + 353 Gaps:6 85.61 410 39.32 3e-86 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_pdb 2j0q_B 139 491 + 353 Gaps:6 85.61 410 39.32 3e-86 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_pdb 2j0q_A 139 491 + 353 Gaps:6 85.61 410 39.32 3e-86 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_uniprot_sprot sp|Q8RXK6|RH8_ARATH 5 495 + 491 Gaps:18 94.85 505 86.43 0.0 DEAD-box ATP-dependent RNA helicase 8 OS Arabidopsis thaliana GN RH8 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H7S2|RH8_ORYSJ 7 495 + 489 Gaps:21 94.49 508 85.00 0.0 DEAD-box ATP-dependent RNA helicase 8 OS Oryza sativa subsp. japonica GN Os02g0641800 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XMK8|RH6_ORYSJ 7 495 + 489 Gaps:19 94.38 498 84.04 0.0 DEAD-box ATP-dependent RNA helicase 6 OS Oryza sativa subsp. japonica GN Os04g0533000 PE 2 SV 1
blastp_uniprot_sprot sp|Q94BV4|RH6_ARATH 7 495 + 489 Gaps:15 93.94 528 79.84 0.0 DEAD-box ATP-dependent RNA helicase 6 OS Arabidopsis thaliana GN RH6 PE 2 SV 2
blastp_uniprot_sprot sp|Q109G2|RH12_ORYSJ 90 495 + 406 Gaps:1 78.12 521 88.94 0.0 DEAD-box ATP-dependent RNA helicase 12 OS Oryza sativa subsp. japonica GN Os10g0503700 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M2E0|RH12_ARATH 4 495 + 492 Gaps:24 94.78 498 80.51 0.0 DEAD-box ATP-dependent RNA helicase 12 OS Arabidopsis thaliana GN RH12 PE 2 SV 1
blastp_uniprot_sprot sp|Q54E49|DDX6_DICDI 112 495 + 384 Gaps:2 90.31 423 78.27 0.0 Probable ATP-dependent RNA helicase ddx6 OS Dictyostelium discoideum GN ddx6 PE 3 SV 1
blastp_uniprot_sprot sp|A6RY31|DHH1_BOTFB 116 495 + 380 none 70.63 538 77.11 0.0 ATP-dependent RNA helicase dhh1 OS Botryotinia fuckeliana (strain B05.10) GN dhh1 PE 3 SV 1
blastp_uniprot_sprot sp|A1CJ18|DHH1_ASPCL 99 495 + 397 Gaps:2 78.53 503 74.18 0.0 ATP-dependent RNA helicase dhh1 OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN dhh1 PE 3 SV 1
blastp_uniprot_sprot sp|Q0U7S9|DHH1_PHANO 103 495 + 393 none 75.29 522 74.81 0.0 ATP-dependent RNA helicase DHH1 OS Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN DHH1 PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 524 548 25 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 503 503 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 504 523 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 353 492 140 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 146 174 29 PS51195 none DEAD-box RNA helicase Q motif profile. IPR014014
Pfam 403 478 76 PF00271 none Helicase conserved C-terminal domain IPR001650
SUPERFAMILY 216 493 278 SSF52540 none none IPR027417
ProSiteProfiles 357 516 160 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 121 495 375 PTHR24031:SF191 none none none
PANTHER 1 82 82 PTHR24031:SF191 none none none
SMART 397 478 82 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 1 82 82 PTHR24031 none none none
Pfam 171 335 165 PF00270 none DEAD/DEAH box helicase IPR011545
ProSitePatterns 293 301 9 PS00039 none DEAD-box subfamily ATP-dependent helicases signature. IPR000629
PANTHER 121 495 375 PTHR24031 none none none
ProSiteProfiles 177 347 171 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Coils 68 89 22 Coil none none none
SMART 165 361 197 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 138 350 213 G3DSA:3.40.50.300 none none IPR027417

1 Localization

Analysis Start End Length
TMHMM 508 525 17

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting