Protein : Qrob_P0032930.2 Q. robur
Protein Identifier  ? Qrob_P0032930.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=10) PF02704 - Gibberellin regulated protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 173  
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0 Synonyms

0 GO Terms

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101308199 1 172 + 172 Gaps:43 100.00 207 33.82 2e-19 uncharacterized protein LOC101308199
blastp_kegg lcl|pxb:103936457 1 172 + 172 Gaps:20 100.00 154 37.01 4e-19 gibberellin-regulated protein 14-like
blastp_kegg lcl|mdm:103442286 1 172 + 172 Gaps:22 100.00 154 37.66 4e-18 gibberellin-regulated protein 14-like
blastp_kegg lcl|fve:101309276 1 172 + 172 Gaps:8 100.00 178 38.20 4e-16 uncharacterized protein LOC101309276
blastp_kegg lcl|pmum:103329909 1 172 + 172 Gaps:46 97.71 131 42.97 1e-14 gibberellin-regulated protein 14-like
blastp_kegg lcl|mdm:103432038 1 172 + 172 Gaps:17 100.00 175 37.71 1e-14 gibberellin-regulated protein 14-like
blastp_kegg lcl|mdm:103416977 1 172 + 172 Gaps:17 100.00 175 37.71 1e-14 gibberellin-regulated protein 14-like
blastp_kegg lcl|mdm:103404363 1 172 + 172 Gaps:17 100.00 175 37.71 1e-14 gibberellin-regulated protein 14-like
blastp_kegg lcl|cam:101494416 7 172 + 166 Gaps:39 95.05 182 34.68 3e-14 gibberellin-regulated protein 14-like
blastp_kegg lcl|pvu:PHAVU_004G019900g 107 172 + 66 Gaps:1 36.31 179 55.38 2e-13 hypothetical protein
blastp_uniprot_sprot sp|Q9LFR3|GASAE_ARATH 107 172 + 66 Gaps:1 23.64 275 46.15 4e-10 Gibberellin-regulated protein 14 OS Arabidopsis thaliana GN GASA14 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GWK5|GASA9_ARATH 111 172 + 62 Gaps:2 50.42 119 48.33 2e-07 Gibberellin-regulated protein 9 OS Arabidopsis thaliana GN GASA9 PE 2 SV 1
blastp_uniprot_sprot sp|P46689|GASA1_ARATH 111 172 + 62 Gaps:2 61.22 98 46.67 8e-07 Gibberellin-regulated protein 1 OS Arabidopsis thaliana GN GASA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q93X17|SNAK2_SOLTU 111 172 + 62 Gaps:2 57.69 104 46.67 1e-06 Snakin-2 OS Solanum tuberosum GN SN2 PE 1 SV 1
blastp_uniprot_sprot sp|F4IQJ4|GASAB_ARATH 111 172 + 62 Gaps:2 63.83 94 46.67 8e-06 Gibberellin-regulated protein 11 OS Arabidopsis thaliana GN GASA11 PE 3 SV 1
rpsblast_cdd gnl|CDD|190394 111 172 + 62 Gaps:2 100.00 60 48.33 7e-07 pfam02704 GASA Gibberellin regulated protein. This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 23 172 150 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 18 22 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 111 172 62 PF02704 none Gibberellin regulated protein IPR003854

2 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23
SignalP_EUK 1 22 21

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 22   Secretory pathway 1 0.942 0.041 NON-PLANT 22