Protein : Qrob_P0032860.2 Q. robur
Protein Identifier  ? Qrob_P0032860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PTHR32044:SF7 - XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED (PTHR32044:SF7) Code Enzyme  EC:2.4.2.39
Gene Prediction Quality  validated Protein length 

Sequence

Length: 663  
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0 Synonyms

0 GO Terms

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0851910 1 662 + 662 none 100.00 662 85.95 0.0 transferase transferring glycosyl groups putative (EC:2.4.1.12)
blastp_kegg lcl|tcc:TCM_016824 1 662 + 662 Gaps:1 100.00 661 86.38 0.0 Cellulose-synthase-like C4 isoform 1
blastp_kegg lcl|cit:102612123 1 662 + 662 Gaps:7 100.00 661 84.87 0.0 xyloglucan glycosyltransferase 4-like
blastp_kegg lcl|cic:CICLE_v10014531mg 1 662 + 662 Gaps:7 100.00 661 84.57 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa002511mg 1 662 + 662 Gaps:4 100.00 664 83.73 0.0 hypothetical protein
blastp_kegg lcl|cmo:103498052 1 662 + 662 Gaps:6 100.00 668 82.63 0.0 xyloglucan glycosyltransferase 4
blastp_kegg lcl|pmum:103329903 1 662 + 662 Gaps:4 100.00 664 82.98 0.0 xyloglucan glycosyltransferase 4
blastp_kegg lcl|csv:101208151 1 662 + 662 Gaps:6 100.00 668 82.34 0.0 xyloglucan glycosyltransferase 4-like
blastp_kegg lcl|csv:101225757 1 662 + 662 Gaps:6 100.00 668 82.19 0.0 xyloglucan glycosyltransferase 4-like
blastp_kegg lcl|vvi:100244115 1 662 + 662 Gaps:2 100.00 664 82.08 0.0 xyloglucan glycosyltransferase 4-like
blastp_uniprot_sprot sp|Q9LJP4|CSLC4_ARATH 1 662 + 662 Gaps:37 100.00 673 79.05 0.0 Xyloglucan glycosyltransferase 4 OS Arabidopsis thaliana GN CSLC4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SB75|CSLC5_ARATH 6 662 + 657 Gaps:17 97.11 692 69.35 0.0 Probable xyloglucan glycosyltransferase 5 OS Arabidopsis thaliana GN CSLC5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SJA2|CSLC8_ARATH 6 662 + 657 Gaps:17 97.10 690 69.25 0.0 Probable xyloglucan glycosyltransferase 8 OS Arabidopsis thaliana GN CSLC8 PE 2 SV 1
blastp_uniprot_sprot sp|Q69L19|CSLC2_ORYSJ 6 662 + 657 Gaps:32 96.42 698 69.24 0.0 Probable xyloglucan glycosyltransferase 2 OS Oryza sativa subsp. japonica GN CSLC2 PE 2 SV 2
blastp_uniprot_sprot sp|Q7PC70|CSLC2_ORYSI 6 662 + 657 Gaps:32 96.42 698 68.80 0.0 Probable xyloglucan glycosyltransferase 2 OS Oryza sativa subsp. indica GN CSLC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q7PC69|CSLC3_ORYSJ 6 662 + 657 Gaps:70 97.05 745 61.96 0.0 Probable xyloglucan glycosyltransferase 3 OS Oryza sativa subsp. japonica GN CSLC3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SRT3|CSLC6_ARATH 30 662 + 633 Gaps:18 93.40 682 65.15 0.0 Probable xyloglucan glycosyltransferase 6 OS Arabidopsis thaliana GN CSLC6 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZQB9|CSLCC_ARATH 6 661 + 656 Gaps:31 96.85 699 63.96 0.0 Probable xyloglucan glycosyltransferase 12 OS Arabidopsis thaliana GN CSLC12 PE 1 SV 1
blastp_uniprot_sprot sp|Q84Z01|CSLCA_ORYSJ 6 661 + 656 Gaps:25 96.36 686 64.30 0.0 Putative xyloglucan glycosyltransferase 10 OS Oryza sativa subsp. japonica GN CSLC10 PE 3 SV 1
blastp_uniprot_sprot sp|A2YHR9|CSLCA_ORYSI 6 661 + 656 Gaps:25 96.36 686 64.30 0.0 Putative xyloglucan glycosyltransferase 10 OS Oryza sativa subsp. indica GN CSLC10 PE 3 SV 1
rpsblast_cdd gnl|CDD|133059 200 436 + 237 Gaps:5 100.00 232 51.72 4e-93 cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1 4-linked glucose residues which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae bacteria fungi and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis CESA1 3 and 6 and CESA4 7 and 8 are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants were significantly smaller while the single mutant plants were almost normal.
rpsblast_cdd gnl|CDD|133043 200 440 + 241 Gaps:19 100.00 234 31.20 1e-46 cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues. They are putative catalytic subunit of cellulose synthase which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
rpsblast_cdd gnl|CDD|31408 158 519 + 362 Gaps:15 79.95 439 27.35 4e-33 COG1215 COG1215 Glycosyltransferases probably involved in cell wall biogenesis [Cell envelope biogenesis outer membrane].
rpsblast_cdd gnl|CDD|163113 194 442 + 249 Gaps:32 36.33 713 33.98 6e-30 TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1 4 polymerization of glucose residues in the formation of cellulose. In bacteria the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide) the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
rpsblast_cdd gnl|CDD|133045 204 392 + 189 Gaps:11 100.00 180 36.67 8e-30 cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit chitin synthase glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues in plants most algae some bacteria and fungi and even some animals. In bacteria algae and lower eukaryotes there is a second unrelated type of cellulose synthase (Type II) which produces acylated cellulose a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin which is a linear homopolymer of beta-(1 4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1 2 polyglucose chains of Glucan.
rpsblast_cdd gnl|CDD|133057 204 441 + 238 Gaps:28 98.31 236 30.17 1e-28 cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1 6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1 6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1 3) beta-(1 6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB ndvC) are involved in the beta-(1 3) beta-(1 6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1 3)-glycosyl linkages. The periplasmic cyclic beta-(1 3) beta-(1 6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus the beta-glucans may function as suppressors of a host defense response.
rpsblast_cdd gnl|CDD|205818 200 432 + 233 Gaps:17 98.69 229 27.88 3e-23 pfam13641 Glyco_tranf_2_3 Glycosyltransferase like family 2. Members of this family of prokaryotic proteins include putative glucosyltransferase which are involved in bacterial capsule biosynthesis.
rpsblast_cdd gnl|CDD|133049 200 438 + 239 Gaps:31 96.27 241 30.60 8e-23 cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit chitin synthase Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues in plants most algae some bacteria and fungi and even some animals. In bacteria algae and lower eukaryotes there is a second unrelated type of cellulose synthase (Type II) which produces acylated cellulose a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin which is a linear homopolymer of beta-(1 4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1 2 polyglucose chains of glucan.
rpsblast_cdd gnl|CDD|183163 194 442 + 249 Gaps:20 28.29 852 30.71 5e-17 PRK11498 bcsA cellulose synthase catalytic subunit Provisional.
rpsblast_cdd gnl|CDD|205809 293 486 + 194 Gaps:17 96.39 194 25.67 5e-14 pfam13632 Glyco_trans_2_3 Glycosyl transferase family group 2. Members of this family of prokaryotic proteins include putative glucosyltransferases which are involved in bacterial capsule biosynthesis.

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 633 637 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 200 442 243 G3DSA:3.90.550.10 none none IPR029044
Phobius 460 489 30 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 202 502 301 SSF53448 none none IPR029044
Phobius 658 662 5 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 6 662 657 PTHR32044:SF7 none none none
PANTHER 6 662 657 PTHR32044 none none none
Phobius 144 162 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 617 632 16 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 90 113 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 495 513 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 490 494 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 201 432 232 PF13641 none Glycosyltransferase like family 2 none
Phobius 114 143 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 514 616 103 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 163 459 297 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 52 70 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 51 51 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 638 657 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 71 89 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

5 Localization

Analysis Start End Length
TMHMM 140 162 22
TMHMM 496 513 17
TMHMM 96 113 17
TMHMM 464 486 22
TMHMM 617 639 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting