Protein : Qrob_P0032840.2 Q. robur
Protein Identifier  ? Qrob_P0032840.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF13563 - 2'-5' RNA ligase superfamily Gene Prediction Quality  validated
Protein length 

Sequence

Length: 184  
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0 Synonyms

0 GO Terms

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103404361 1 183 + 183 none 98.92 185 81.42 1e-110 uncharacterized LOC103404361
blastp_kegg lcl|pper:PRUPE_ppa012091mg 1 183 + 183 none 100.00 183 80.87 4e-110 hypothetical protein
blastp_kegg lcl|pxb:103941399 1 183 + 183 none 100.00 183 80.87 8e-110 uncharacterized LOC103941399
blastp_kegg lcl|pxb:103939647 1 183 + 183 none 100.00 183 80.87 8e-110 uncharacterized LOC103939647
blastp_kegg lcl|mdm:103442276 1 183 + 183 none 100.00 183 80.87 4e-109 uncharacterized LOC103442276
blastp_kegg lcl|pxb:103936448 1 183 + 183 none 100.00 183 80.87 5e-109 uncharacterized LOC103936448
blastp_kegg lcl|pxb:103936435 1 183 + 183 none 100.00 183 80.87 5e-109 uncharacterized LOC103936435
blastp_kegg lcl|fve:101311595 1 183 + 183 none 100.00 183 80.33 6e-109 uncharacterized protein LOC101311595
blastp_kegg lcl|pmum:103329899 1 183 + 183 none 100.00 183 80.87 8e-109 uncharacterized LOC103329899
blastp_kegg lcl|vvi:100249281 1 183 + 183 none 100.00 183 82.51 2e-108 uncharacterized LOC100249281
rpsblast_cdd gnl|CDD|205741 41 165 + 125 Gaps:6 80.92 152 18.70 5e-10 pfam13563 2_5_RNA_ligase2 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes but they may not share the RNA ligase activity.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 2 111 110 G3DSA:3.90.1140.10 none none IPR009097
SUPERFAMILY 4 154 151 SSF55144 none none IPR009097
Pfam 40 155 116 PF13563 none 2'-5' RNA ligase superfamily none

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting