Protein : Qrob_P0032230.2 Q. robur
Protein Identifier  ? Qrob_P0032230.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) 6.1.1.10 - Methionine--tRNA ligase. Code Enzyme  EC:6.1.1.10
Gene Prediction Quality  validated Protein length 

Sequence

Length: 866  
Kegg Orthology  K01874
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004825 methionine-tRNA ligase activity Catalysis of the reaction: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met).
GO:0006431 methionyl-tRNA aminoacylation The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO:0000049 tRNA binding Interacting selectively and non-covalently with transfer RNA.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0017s08450g 4 865 + 862 Gaps:74 98.88 801 83.33 0.0 methionyl-tRNA synthetase family protein
blastp_kegg lcl|sly:101263723 4 865 + 862 Gaps:72 97.78 812 80.48 0.0 probable methionine--tRNA ligase-like
blastp_kegg lcl|sot:102583584 2 865 + 864 Gaps:72 98.03 812 80.03 0.0 probable methionine--tRNA ligase-like
blastp_kegg lcl|cit:102620961 9 865 + 857 Gaps:73 97.40 809 81.35 0.0 probable methionine--tRNA ligase-like
blastp_kegg lcl|cic:CICLE_v10004343mg 4 865 + 862 Gaps:72 98.27 808 80.10 0.0 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10004167mg 4 865 + 862 Gaps:73 98.75 799 78.33 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331615 2 865 + 864 Gaps:86 98.38 801 79.19 0.0 probable methionine--tRNA ligase
blastp_kegg lcl|pmum:103331646 2 865 + 864 Gaps:86 98.13 803 79.06 0.0 probable methionine--tRNA ligase
blastp_kegg lcl|pper:PRUPE_ppa001564mg 2 865 + 864 Gaps:86 98.38 801 78.81 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001592mg 2 865 + 864 Gaps:86 98.99 796 78.30 0.0 hypothetical protein
blastp_pdb 1rqg_A 14 805 + 792 Gaps:53 90.30 722 40.80 2e-125 mol:protein length:722 Methionyl-tRNA synthetase
blastp_pdb 1f4l_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 METHIONYL-TRNA SYNTHETASE
blastp_pdb 1pg2_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 1pg0_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 1pfy_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 1pfw_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 1pfv_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 1pfu_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 1p7p_A 11 575 + 565 Gaps:53 97.28 551 30.78 3e-65 mol:protein length:551 Methionyl-tRNA synthetase
blastp_pdb 3h9c_A 11 575 + 565 Gaps:53 97.99 547 30.78 3e-65 mol:protein length:547 Methionyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9SVN5|SYM_ARATH 4 865 + 862 Gaps:74 98.87 797 75.25 0.0 Probable methionine--tRNA ligase OS Arabidopsis thaliana GN At4g13780 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZTS1|SYM_ORYSJ 9 865 + 857 Gaps:9 98.38 801 75.89 0.0 Probable methionine--tRNA ligase OS Oryza sativa subsp. japonica GN Os06g0508700 PE 2 SV 2
blastp_uniprot_sprot sp|Q20970|SYMC_CAEEL 5 847 + 843 Gaps:85 94.87 917 46.67 0.0 Methionine--tRNA ligase cytoplasmic OS Caenorhabditis elegans GN mrs-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q54X95|SYMC_DICDI 5 865 + 861 Gaps:44 98.78 736 52.68 0.0 Probable methionine--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN metS PE 3 SV 1
blastp_uniprot_sprot sp|Q68FL6|SYMC_MOUSE 5 586 + 582 Gaps:23 62.64 902 56.11 0.0 Methionine--tRNA ligase cytoplasmic OS Mus musculus GN Mars PE 2 SV 1
blastp_uniprot_sprot sp|Q9UUF2|SYMC_SCHPO 5 587 + 583 Gaps:28 72.51 782 56.97 0.0 Probable methionine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rar1 PE 3 SV 1
blastp_uniprot_sprot sp|Q2T9L8|SYMC_BOVIN 5 655 + 651 Gaps:23 70.60 898 50.16 0.0 Methionine--tRNA ligase cytoplasmic OS Bos taurus GN MARS PE 2 SV 1
blastp_uniprot_sprot sp|P56192|SYMC_HUMAN 5 586 + 582 Gaps:23 62.78 900 54.69 0.0 Methionine--tRNA ligase cytoplasmic OS Homo sapiens GN MARS PE 1 SV 2
blastp_uniprot_sprot sp|Q6PF21|SYMC_XENLA 5 585 + 581 Gaps:24 62.21 905 53.82 0.0 Methionine--tRNA ligase cytoplasmic OS Xenopus laevis GN mars PE 2 SV 1
blastp_uniprot_sprot sp|P00958|SYMC_YEAST 5 586 + 582 Gaps:22 74.83 751 53.56 0.0 Methionine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MES1 PE 1 SV 4

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 703 863 161 SSF50249 none none IPR012340
Gene3D 191 389 199 G3DSA:3.40.50.620 none none IPR014729
Gene3D 11 150 140 G3DSA:3.40.50.620 none none IPR014729
PRINTS 299 314 16 PR01041 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" Methionyl-tRNA synthetase signature IPR014758
PRINTS 96 107 12 PR01041 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" Methionyl-tRNA synthetase signature IPR014758
PRINTS 15 28 14 PR01041 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" Methionyl-tRNA synthetase signature IPR014758
PRINTS 264 275 12 PR01041 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" Methionyl-tRNA synthetase signature IPR014758
PRINTS 48 62 15 PR01041 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" Methionyl-tRNA synthetase signature IPR014758
PRINTS 394 405 12 PR01041 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" Methionyl-tRNA synthetase signature IPR014758
ProSiteProfiles 703 806 104 PS50886 "Reactome:REACT_71" tRNA-binding domain profile. IPR002547
SUPERFAMILY 184 393 210 SSF52374 none none none
SUPERFAMILY 10 147 138 SSF52374 none none none
PANTHER 5 725 721 PTHR11946 none none none
Coils 589 610 22 Coil none none none
SUPERFAMILY 148 184 37 SSF57770 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10" none IPR029038
PANTHER 5 725 721 PTHR11946:SF69 none none none
Hamap 11 580 570 MF_00098 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10" Methionine--tRNA ligase [metG]. IPR023458
Gene3D 390 567 178 G3DSA:1.10.730.10 "Reactome:REACT_71" none IPR009080
Pfam 709 804 96 PF01588 "Reactome:REACT_71" Putative tRNA binding domain IPR002547
Gene3D 151 184 34 G3DSA:2.20.28.20 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10" none IPR029038
ProSitePatterns 20 31 12 PS00178 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-I signature. IPR001412
TIGRFAM 13 533 521 TIGR00398 "KEGG:00450+6.1.1.10","KEGG:00970+6.1.1.10","Reactome:REACT_71" metG: methionine--tRNA ligase IPR014758
Gene3D 705 861 157 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 399 582 184 SSF47323 "Reactome:REACT_71" none IPR009080
Pfam 13 407 395 PF09334 "Reactome:REACT_71" tRNA synthetases class I (M) IPR015413

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting